SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene35892

Length: 237 nt

UniGene Fasta

>uagpf_v2_unigene35892
CATGTTCAGTATTCTTTCTATACATCTGATGCTTCGTTTCCCAGTCATGCTCTCAGAAATGTTTCTTACAACAAAGTGGTGATTGAAGCGGATACCCATGTATCTGCAACAGTGGCAGTGCAGGTAGATCAGAGTGCCACTTTTGTTCCTCTTGGTGGGATTTATTCCTAAGAGAGGGGCTCATTTGATTAGTACAGACAGAATTTGCTTAGTCCTTATTACTTAATTCCATTGGTT

Ace file of the UniGene uagpf_v2_unigene35892

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene46722	1/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polygalacturonase QRT3 [Arabidopsis thaliana] ref\|NP_001078410.1\| Polygalacturonase QRT3 [Arabidopsis thaliana] sp\|O49432.1\|QRT3_ARATH RecName: Full=Polygalacturonase QRT3; Short=AtQRT3; Short=PG QRT3; AltName: Full=Pectinase QRT3; AltName: Full=Protein Q	-	-	2.0e-35	60%
FL-Next	sp=Polygalacturonase QRT3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	55%
Blast2go	protein	-	-	0.0	71%

Source	ECs	Term	Type	e value	Identity
Blast2go	Polygalacturonase.	EC:3.2.1.15	-	0.0	71%

Source	KEGGs	Term	Identity
Blast2go	Pentose and glucuronate interconversions	00040	71%
Blast2go	Starch and sucrose metabolism	00500	71%
Blast2go	Metabolic pathways	01100	71%

Source	GOs	Term	Type	Identity
Blast2go	microsporogenesis	GO:0009556	Biological Process	71%
Blast2go	pollen exine formation	GO:0010584	Biological Process	71%
Blast2go	polygalacturonase activity	GO:0004650	Molecular Function	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	Parallel beta-helix repeat	IPR006626	-	0.0	-
Sma3	Pectin lyase fold	IPR012334	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: O49432

Fln msg: your sequence is shorter than subject: 57 - 481

Fln protein: HVQYSFYTSDASFPSHALRNVSYNKVVIEADTHVSATVAVQVDQSATFVPLGGIYS*

Protein Length: 58

Fln nts: CATGTTCAGTATTCTTTCTATACATCTGATGCTTCGTTTCCCAGTCATGCTCTCAGAAATGTTTCTTACAACAAAGTGGTGATTGAAGCGGATACCCATGTATCTGCAACAGTGGCAGTGCAGGTAGATCAGAGTGCCACTTTTGTTCCTCTTGGTGGGATTTATTCCTAA___GAGAGGGGCTCATTTGATTAGTACAGACAGAATTTGCTTAGTCCTTATTACTTAATTCCATTGGTT

Fln Alignment:

uagpf_mira_c23588___HVQYSFYTSDAS-FPSHALRNVSYNKVVIEADTHVSATVAVQVDQ
O49432________________HVQYTLVASEAGVFPLHALRNVSDNRVVVETNAPVTGTVYVTVNQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain