SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene35868

Length: 210 nt

UniGene Fasta

>uagpf_v2_unigene35868
CGAAAACAATTCAAGGGCCTTTTTGATAAGAAGCCTGGACAAATAGCCGAGGAAGGGAGCAAAAAGATGGTAGATAATGAGCACGACCCGGATCATATTCAAGGGTCAAAAGGTTCTGCTCAAAATTCAGATGACTCTGATGGAGAGGAATTTGAAAAATCACCTCAGGCTGCAAAATTAGGGGCATTTTCAAGGATCTGGACTCAAGGG

Ace file of the UniGene uagpf_v2_unigene35868

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene26891	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Fk506 binding protein, putative n=1 Tax=Ricinus communis RepID=B9SQB6_RICCO	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	45%
Blast2go	peptidyl-prolyl isomerase pasticcino1	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	embryonic pattern specification	GO:0009880	Biological Process	75%
Blast2go	response to cytokinin stimulus	GO:0009735	Biological Process	75%
Blast2go	cell differentiation	GO:0030154	Biological Process	75%
Blast2go	establishment of cell polarity	GO:0030010	Biological Process	75%
Blast2go	lateral root development	GO:0048527	Biological Process	75%
Blast2go	very long-chain fatty acid biosynthetic process	GO:0042761	Biological Process	75%
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	75%
Blast2go	protein binding	GO:0005515	Molecular Function	75%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain	IPR001179	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: C6T5X7

Fln msg: STOP codon was not found. Distance to subject end: 15 aas, your sequence is shorter than subject: 70 - 226

Fln protein: RKQFKGLFDKKPGQIAEEGSKKMVDNEHDPDHIQGSKGSAQNSDDSDGEEFEKSPQAAKLGAFSRIWTQG

Protein Length: 71

Fln nts: CGAAAACAATTCAAGGGCCTTTTTGATAAGAAGCCTGGACAAATAGCCGAGGAAGGGAGCAAAAAGATGGTAGATAATGAGCACGACCCGGATCATATTCAAGGGTCAAAAGGTTCTGCTCAAAATTCAGATGACTCTGATGGAGAGGAATTTGAAAAATCACCTCAGGCTGCAAAATTAGGGGCATTTTCAAGGATCTGGACTCAAGGG

Fln Alignment:

uagpf_mira_c23559___RKQFKGLFDKKPGQIAEEGSKKMVDNEHDPDHIQGSKGSAQNSDDSDGEE-FEKSPQAAKLGAFSRIWTQG
C6T5X7________________RKQFKGLFDKKPGEIAE--AKADVDGDLITSEIQKDDEVHGDSDGTNSEDSHEAPPEAQRTGWFSLFWPSG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain