SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene35848

Length: 251 nt

UniGene Fasta

>uagpf_v2_unigene35848
CGTCGTGACCTTGGCTGTCACTCAGTAAGGATGGGTAGCTCTTAATTATATGATGGGTAGATTGCAGAATATGCCGATTCTGGAGACGTTTGGTGCACTTGACTTAGGGGGTTCCTCATTACAGGTGACATTTGAATCTAAATATGGCTTGAATCTGACCATTGGAACAATGGAACGCCATCTAAATGCATATTCCCTTACAGGTTATGGCCTAAATGATGCCTTTGAAAGTCCGTTGTACTTCTACTCAG

Ace file of the UniGene uagpf_v2_unigene35848

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene24300	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Putative nucleoside phosphatase [Oryza sativa Japonica Group]	-	-	47%
FL-Next	tr=Adenosine diphosphatase, putative; Ricinus communis (Castor bean).	-	-	63%
Blast2go	ectonucleoside triphosphate diphosphohydrolase	-	-	64%

Source	InterPros	Term	Type	Identity
Sma3	Nucleoside phosphatase GDA1/CD39	IPR000407	-	-
Sma3	Drug/metabolite transporter	IPR000620	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-
Sma3	Alkaline phosphatase, active site	IPR018299	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9T6C6

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 390 aas, your sequence is shorter than subject: 83 - 762

Fln protein: VVTLAVTQ*GWVALNYMMGRLQNMPILETFGALDLGGSSLQVTFESKYGLNLTIGTMERHLNAYSLTGYGLNDAFESPLYFYS

Protein Length: 84

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTAAGGATGGGTAGCTCTTAATTATATGATGGGTAGATTGCAGAATATGCCGATTCTGGAGACGTTTGGTGCACTTGACTTAGGGGGTTCCTCATTACAGGTGACATTTGAATCTAAATATGGCTTGAATCTGACCATTGGAACAATGGAACGCCATCTAAATGCATATTCCCTTACAGGTTATGGCCTAAATGATGCCTTTGAAAGTCCGTTGTACTTCTACTCAG

Fln Alignment:

uagpf_mira_c23536___GWVALNYMMGRLQNMPILETFGALDLGGSSLQVTFESK------YGLNLTIGTMERHLNAYSLTGYGLNDAFE
B9T6C6________________GWISLNYQTGVLGNSPKKVTFGALDMGGSSLQVTFESKDLGHNETDLNLRIGAAYHHLTAYSLAGYGLNDAFD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain