SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene35725

Length: 199 nt

UniGene Fasta

>uagpf_v2_unigene35725
TCAAGTGTGGCTGTTTGGGTAGTGAATCCTGGGAATGGGCAAATAATGAAACATGAAATGGCAACCTATGATGGAGGCCTATCACTAGACAAGCTAATTGTGACAAAGGATACATTGGTTGCTTTGGATTCTGCAAGATCAACTATTATTACAAGTGGCATTACAAATGGAGAGCTGTCACTACATAAGACAAACTCTT

Ace file of the UniGene uagpf_v2_unigene35725

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene845	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	DUF1620 domain containing protein	-	-	40%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	46%
Blast2go	uncharacterized protein kiaa0090 homolog	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	75%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	75%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	75%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	75%
Blast2go	plasma membrane	GO:0005886	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	Quinonprotein alcohol dehydrogenase-like	IPR011047	-	-
Sma3	Domain of unknown function DUF1620	IPR011678	-	-
Sma3	Pyrrolo-quinoline quinone beta-propeller repeat	IPR018391	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9IKK9

Fln msg: Distance to subject end: 509 aas, your sequence is shorter than subject: 66 - 775

Fln protein: SSVAVWVVNPGNGQIMKHEMATYDGGLSLDKLIVTKDTLVALDSARSTIITSGITNGELSLHKTNS

Protein Length: 67

Fln nts: TCAAGTGTGGCTGTTTGGGTAGTGAATCCTGGGAATGGGCAAATAATGAAACATGAAATGGCAACCTATGATGGAGGCCTATCACTAGACAAGCTAATTGTGACAAAGGATACATTGGTTGCTTTGGATTCTGCAAGATCAACTATTATTACAAGTGGCATTACAAATGGAGAGCTGTCACTACATAAGACAAACTCTT

Fln Alignment:

uagpf_mira_c23392___VWVVNPGNGQIMKHEMATYDGGLSLDKLIVTKDTLVALDSARSTIITSGITNGELSLHKT
B9IKK9________________VYQINAKNGELLKHDSAAFDGGFSGEVSLVSKAKLVVLDAARSTLLTISFQNGEISFQKT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain