SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene35713

Length: 335 nt

UniGene Fasta

>uagpf_v2_unigene35713
CGTCGTGACCTTGGCTGTCACTCTCAAACTGGATTACAGATGCACCGCATGTCTTTCCCAGGCGGCTGAGAACCAGAAAAACGAATTAAGCTACCCATTTTACGTTGTGATTTGGTGTCACTTATTTGCGAGCAATGGCTACAATTCCAGCATAGCAGCAGCAGGGAACAACGTGCTGTACCGTGGAATGACGATTAATGATGGGAGCGGGTGGAAGAAGTCTTCCATGGCGGGGGATGGTTCCGCTCAACTGAATGCGCGCCTATGGTCTTACAGGACGTCGGGCAAGGCCGTTCGAGCTCAGCCTGTAATGGGACAATAAAAATGAAGGCAAA

Ace file of the UniGene uagpf_v2_unigene35713

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22881	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Proton gradient regulation 5 n=1 Tax=Pinus taeda RepID=B5LCD1_PINTA	-	-	97%
FL-Next	tr=Proton gradient regulation 5; Pinus taeda (Loblolly pine).	-	-	96%
Blast2go	proton gradient regulation 5	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	response to water deprivation	GO:0009414	Biological Process	82%
Blast2go	response to high light intensity	GO:0009644	Biological Process	82%
Blast2go	photosynthetic electron transport in photosystem I	GO:0009773	Biological Process	82%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	82%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	82%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B5LCD1

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 66 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 107 - 133

Fln protein: VVTLAVTLKLDYRCTACLSQAAENQKNELSYPFYVVIWCHLFASNGYNSSIAAAGNNVLYRGMTINDGSGWKKSSMAGDGSAQLNARLWSYRTSGKAVRAQPVMGQ*

Protein Length: 108

Fln nts: CGTCGTGACCTTGGCTGTCACTCTCAAACTGGATTACAGATGCACCGCATGTCTTTCCCAGGCGGCTGAGAACCAGAAAAACGAATTAAGCTACCCATTTTACGTTGTGATTTGGTGTCACTTATTTGCGAGCAATGGCTACAATTCCAGCATAGCAGCAGCAGGGAACAACGTGCTGTACCGTGGAATGACGATTAATGATGGGAGCGGGTGGAAGAAGTCTTCCATGGCGGGGGATGGTTCCGCTCAACTGAATGCGCGCCTATGGTCTTACAGGACGTCGGGCAAGGCCGTTCGAGCTCAGCCTGTAATGGGACAATAAAAATGAAGGCAAA

Fln Alignment:

uagpf_mira_c23372___SSIAAAGNNVLYRGMTINDGSGWKKSSMAGDGSAQLNARLWSYRTSGKAVRAQPVMG
B5LCD1________________SSIPAAGNNVLRRGMTINDGSGWKKSSMAGDGSAQLNARLWSYRTSGKAVRAQPVMG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain