SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene35629

Length: 238 nt

UniGene Fasta

>uagpf_v2_unigene35629
CGTCGTGACCTTGGCTGTCACTCATTTTCTGGTCCTGTCACAACTCAACATGAATCACAGATTGATCATTCATTCCCTTTCCTTGAATCACTCAATGAGGTTATGGAAAGCACTAGAACAGAGGAATCAGAGAATCATGTGCACAGAATGTATTTTATGGGGCCAAATACTTTTGGGGAACCATGGCACTTGCCTCATTCACCACCACACCGAATTAATTCTATTGTGTATGAGGATG

Ace file of the UniGene uagpf_v2_unigene35629

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11821	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	glycine-rich protein [Arabidopsis thaliana] ref\|NP_001190893.1\| glycine-rich protein [Arabidopsis thaliana] ref\|NP_001190894.1\| glycine-rich protein [Arabidopsis thaliana] gb\|AEE86144.1\| glycine-rich protein [Arabidopsis thaliana] gb\|AEE86145.1\| glycine-r	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	73%
Blast2go	uncharacterized protein	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	86%
Blast2go	membrane	GO:0016020	Cellular Component	86%
Blast2go	vacuole	GO:0005773	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Glycoside hydrolase, family 11, active site	IPR018208	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9RRX1

Fln msg: Distance to subject end: 435 aas, your sequence is shorter than subject: 79 - 1426

Fln protein: RRDLGCHSFSGPVTTQHESQIDHSFPFLESLNEVMESTRTEESENHVHRMYFMGPNTFGEPWHLPHSPPHRINSIVYED

Protein Length: 80

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTCTGGTCCTGTCACAACTCAACATGAATCACAGATTGATCATTCATTCCCTTTCCTTGAATCACTCAATGAGGTTATGGAAAGCACTAGAACAGAGGAATCAGAGAATCATGTGCACAGAATGTATTTTATGGGGCCAAATACTTTTGGGGAACCATGGCACTTGCCTCATTCACCACCACACCGAATTAATTCTATTGTGTATGAGGATG

Fln Alignment:

uagpf_mira_c23261___LGCHSFSGPVTTQHESQIDHSFPFLESLNEVMESTRTEESENHVHRMYFMGPNTFGEPWHLPHSPPHRINSIVYE
B9RRX1________________VGVDELPGPAPTQHGSQIDHSFPFLESLNEVLETNRAEESQNHVHRMYFMGPNTFSEPWHLPHTPPEQIKEIVYE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain