SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene35525

Length: 170 nt

UniGene Fasta

>uagpf_v2_unigene35525
TTTTCCTGGCTGCACATGCAGATGGTAATTTATATTTTTATCACAAGAATAAAGATGGAACTATTGATGCAACTTTACCAATAATAAAGGATCAGACCCAATTTTCCGTGACACATGCAAAGTCTAGTAAGAGCAACCCTATTGCAAGGTGGCATGTCTGCCAATGTCCC

Ace file of the UniGene uagpf_v2_unigene35525

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene154	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb\|AEE79079.1\| transducin/WD40 domain-containing protein [Arabidopsis thaliana]	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	70%
Blast2go	transducin wd-40 repeat-containing protein	-	-	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleotide binding	GO:0000166	Molecular Function	0.0	81%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, V0 complex, proteolipid subunit C	IPR000245	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	ATPase, F0/V0 complex, subunit C	IPR002379	-	-
Sma3	ATPase, V0 complex, proteolipid subunit C, eukaryotic	IPR011555	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7SKW7

Fln msg: Distance to subject end: 246 aas, your sequence is shorter than subject: 56 - 548

Fln protein: FLAAHADGNLYFYHKNKDGTIDATLPIIKDQTQFSVTHAKSSKSNPIARWHVCQCP

Protein Length: 57

Fln nts: TTTTCCTGGCTGCACATGCAGATGGTAATTTATATTTTTATCACAAGAATAAAGATGGAACTATTGATGCAACTTTACCAATAATAAAGGATCAGACCCAATTTTCCGTGACACATGCAAAGTCTAGTAAGAGCAACCCTATTGCAAGGTGGCATGTCTGCCAATGTCCC

Fln Alignment:

uagpf_mira_c23142___FLAAHADGNLYFYHKNKDGTIDATLPIIKDQTQFSVTHAKSSKSNPIARWHVCQ
D7SKW7________________FAVAHSDGNLYVYEKGKDGTGDSSFPVIKDQTQFTVAHARSSKSNPVARWHICQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain