SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene35498

Length: 129 nt

UniGene Fasta

>uagpf_v2_unigene35498
CTTCCACTTACTTCTAAAGATGGAGTAGGCAATTTGTCAACTTTGGTTCGGATCAGGACAGATCACTGGCCATGCCTTGCTTACATGGATGAGTATTTGGAAGCTTTTAGCCTTTAGATGACATGCATT

Ace file of the UniGene uagpf_v2_unigene35498

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10481	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	83%
Blast2go	binding protein	-	-	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	0.0	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S10, serine carboxypeptidase, active site	IPR018202	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9RPX7

Fln msg: your sequence is shorter than subject: 39 - 1113

Fln protein: LPLTSKDGVGNLSTLVRIRTDHWPCLAYMDEYLEAFSL*

Protein Length: 40

Fln nts: CTTCCACTTACTTCTAAAGATGGAGTAGGCAATTTGTCAACTTTGGTTCGGATCAGGACAGATCACTGGCCATGCCTTGCTTACATGGATGAGTATTTGGAAGCTTTTAGCCTTTAG___ATGACATGCATT

Fln Alignment:

uagpf_mira_c23104___VGNLSTLVRIRTDHWPCLAYMDEYLEAFSL
B9RPX7________________VSDLSTLVRIRTDHWPCLAYVDEYLEALFL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain