SustainPineDB

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Assembly info
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SSRs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene35448

Length: 497 nt

UniGene Fasta

>uagpf_v2_unigene35448
CGTCGTGACCTTGGCTGTCACTCAAGTTTGGCGGGGCAGATGGTGGAGGAAGGCTATACACCTGATATGAACTTCGTGCTACAAGATGTTGAGGAGGAAGAGAAGGAGAATGTACTATATGGCCATAGTGAAAAGCTTGCAATTGCTTTTGGGCTTATGAACACATGTCCTGGAATGCCTATCCGAATCACTAAAAACCTTCGGGTTTGTGGTGATTGCCATATTGCCACAAAATTCATCTCCAAAATTACCACGCGTGAAATCATTGTTAGGGATGCAAACCGTTTTCATCACTTCAAGAATGGACGGTGTTCTTGTGGGGACTATTGGTGAAGGTAAAGAAAATGAGGAGCAAACTGGGCTGGTGGCTAGGGATTTTGTATATCTTTGTCTATGATAAAGTAGATGCTCAGCAATCCAGGTTATGAATATTTTGTAATTGAGCAATCTTTTGAACTTGTAATATTTAGTCTCACAGATGAGGAACGCCAGTAAAT

Ace file of the UniGene uagpf_v2_unigene35448

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene71496	3/4

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Blast2go	pentatricopeptide repeat protein	-	-	81%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Adenosine/AMP deaminase domain	IPR001365	-	-
Sma3	C-5 cytosine methyltransferase	IPR001525	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	MAP kinase, conserved site	IPR003527	-	-
Sma3	Domain of unknown function DUF221	IPR003864	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3		IPR018115	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: your sequence is shorter than subject: 111 - 246

Fln protein: RRDLGCHSSLAGQMVEEGYTPDMNFVLQDVEEEEKENVLYGHSEKLAIAFGLMNTCPGMPIRITKNLRVCGDCHIATKFISKITTREIIVRDANRFHHFKNGRCSCGDYW*

Protein Length: 112

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTTTGGCGGGGCAGATGGTGGAGGAAGGCTATACACCTGATATGAACTTCGTGCTACAAGATGTTGAGGAGGAAGAGAAGGAGAATGTACTATATGGCCATAGTGAAAAGCTTGCAATTGCTTTTGGGCTTATGAACACATGTCCTGGAATGCCTATCCGAATCACTAAAAACCTTCGGGTTTGTGGTGATTGCCATATTGCCACAAAATTCATCTCCAAAATTACCACGCGTGAAATCATTGTTAGGGATGCAAACCGTTTTCATCACTTCAAGAATGGACGGTGTTCTTGTGGGGACTATTGGTGA___AGGTAAAGAAAATGAGGAGCAAACTGGGCTGGTGGCTAGGGATTTTGTATATCTTTGTCTATGATAAAGTAGATGCTCAGCAATCCAGGTTATGAATATTTTGTAATTGAGCAATCTTTTGAACTTGTAATATTTAGTCTCACAGATGAGGAACGCCAGTAAAT

Fln Alignment:

uagpf_mira_c23046___LAGQMVEEGYTPDMNFVLQDVEEEEKENVLYGHSEKLAIAFGLMNTCPGMPIRITKNLRVCGDCHIATKFISKITTREIIVRDANRFHHFKNGRCSCGDYW
D5AAE0________________LARQMEAAGYVPDTNFVLHDVEMEQKEHSLYHHSEKLAIAFGLISTLPGLPVRIIKNLRVCGDCHTATKFISKIVEREIIIRDANRFHHFKDGLCSCGDYW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain