SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene35371

Length: 290 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene35371
ATTATGTGAGTTGTTGGACCTCTTCATTCAGGAAGTAGGCCCAAGCAATGTTGTCCAAGTCATAACGGACAACGCTGCAAATTATGTTGCAACTGGCAAAATGCTTATGAAGAGGTATCCTAACTTGTTTTGGACACCTTGTGCTGCTCATTGCATTGAATTGATGTTGGAGGATATAGGTAAAATTCCTACCGTGAGGGATATTGTTGAATCAGCCAAGAGCATAACAAAATTTATATATAATCATGCATATGTGCTTAGCTTGATGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene35371 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene32191	1/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF659 domain containing protein	-	-	0.0	49%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	55%
Blast2go	hypothetical protein VITISV_037171 [Vitis vinifera]	-	-	6.09038e-40	71%

Source	InterPros	Term	Type	Identity
Sma3	Neuraxin/MAP1B repeat	IPR000102	-	-
Sma3	Photosystem I PsaA/PsaB	IPR001280	-	-
Sma3	Glycoside hydrolase, family 1	IPR001360	-	-
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	-
Sma3	Polymorphic outer membrane protein repeat	IPR003368	-	-
Sma3	Zinc finger, BED-type predicted	IPR003656	-	-
Sma3	Domain of unknown function DUF250	IPR004853	-	-
Sma3	Peptidase C45, acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase	IPR005079	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3		IPR011523	-	-
Sma3		IPR012335	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Thioredoxin domain	IPR013766	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3		IPR015467	-	-
Sma3		IPR015706	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5ADE3

Fln msg: Distance to subject end: 316 aas, your sequence is shorter than subject: 96 - 428

Fln protein: LCELLDLFIQEVGPSNVVQVITDNAANYVATGKMLMKRYPNLFWTPCAAHCIELMLEDIGKIPTVRDIVESAKSITKFIYNHAYVLSLMSDSQGHD

Protein Length: 97

Fln nts: ATTATGTGAGTTGTTGGACCTCTTCATTCAGGAAGTAGGCCCAAGCAATGTTGTCCAAGTCATAACGGACAACGCTGCAAATTATGTTGCAACTGGCAAAATGCTTATGAAGAGGTATCCTAACTTGTTTTGGACACCTTGTGCTGCTCATTGCATTGAATTGATGTTGGAGGATATAGGTAAAATTCCTACCGTGAGGGATATTGTTGAATCAGCCAAGAGCATAACAAAATTTATATATAATCATGCATATGTGCTTAGCTTGATGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

uagpf_mira_c22946___ELLDLFIQEVGPSNVVQVITDNAANYVATGKMLMKRYPNLFWTPCAAHCIELMLEDIGKIPTVRDIVESAKSITKFIYNHAYVLSLMSDSQGHD
A5ADE3________________ELLKTIIKEVGKENVVQIITDNGSAFMKAGKQLMKKY-NLYWTPCAAHCINLIFEDIGKRPSVIEVINNARKITNFIYNHGWLLAQMRKYCGGD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain