SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene35355

Length: 83 nt

UniGene Fasta

>uagpf_v2_unigene35355
AGCCAAAATGAGCTCTGCAATACTCTCAAAGGCATTCTTGCAGGTTTCTCTCAGAGATGGAACCCTGGAGGGACCTGGGATGT

Ace file of the UniGene uagpf_v2_unigene35355

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1628	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	Chorismate synthase n=1 Tax=Picea sitchensis RepID=B8LL06_PICSI	-	-	93%
FL-Next	sp=Chorismate synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	chorismate synthase	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Chorismate synthase.	EC:4.2.3.5	-	0.0	86%

Source	KEGGs	Term	Identity
Blast2go	Phenylalanine, tyrosine and tryptophan biosynthesis	00400	86%
Blast2go	Biosynthesis of phenylpropanoids	01061	86%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	86%
Blast2go	Biosynthesis of plant hormones	01070	86%
Blast2go	Metabolic pathways	01100	86%
Blast2go	Biosynthesis of secondary metabolites	01110	86%

Source	GOs	Term	Type	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	86%
Blast2go	aromatic amino acid family biosynthetic process	GO:0009073	Biological Process	86%
Blast2go	chorismate synthase activity	GO:0004107	Molecular Function	86%
Blast2go	nucleolus	GO:0005730	Cellular Component	86%
Blast2go	chloroplast	GO:0009507	Cellular Component	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	Chorismate synthase	IPR000453	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LL06

Fln msg: Distance to subject end: 417 aas, your sequence is shorter than subject: 25 - 442

Fln protein: MSSAILSKAFLQVSLRDGTLEGPGM

Protein Length: 26

Fln nts: AGCCAAA_-_ATGAGCTCTGCAATACTCTCAAAGGCATTCTTGCAGGTTTCTCTCAGAGATGGAACCCTGGAGGGACCTGGGATGT

Fln Alignment:

uagpf_mira_c22926___MSSAILSKAFLQVSLRDGTLEGPGM
B8LL06________________MSSAILSKAFLQVSLKDGTLERPGM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain