SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene35252

Length: 244 nt

UniGene Fasta

>uagpf_v2_unigene35252
GGGAGGAGGATGTCCGTCAAGAAACGGTAGCCGCGATGCCGAATCCGAAGAAGAACGTGGGGAGGCATTACAGGGGCGTAAGGCGAAGGCCGTGGGGGAAATTTGCGGCGGAGATAAGGGACTCCGCGCGCAATGGCGCCAGAGTGTGGCTCGGCACTTTCACTACGGCCGAGGAAGCTGCGCTCGCATATGACCGTGCCGCTTACAAGATGAGGGGATCTAGGGCTTTGCTTAACTTCCCCCT

Ace file of the UniGene uagpf_v2_unigene35252

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28850	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ethylene responsive element binding protein 1 n=1 Tax=Gossypium barbadense RepID=A3FMG9_GOSBA	-	-	2.0e-24	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Blast2go	ethylene-responsive transcription factor 1a	-	-	0.0	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	0.0	63%
Blast2go	response to chitin	GO:0010200	Biological Process	0.0	63%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Signal recognition particle, SRP54 subunit, GTPase	IPR000897	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQI3

Fln msg: Distance to subject end: 90 aas, your sequence is shorter than subject: 80 - 350

Fln protein: EEDVRQETVAAMPNPKKNVGRHYRGVRRRPWGKFAAEIRDSARNGARVWLGTFTTAEEAALAYDRAAYKMRGSRALLNFP

Protein Length: 81

Fln nts: GGGAGGAGGATGTCCGTCAAGAAACGGTAGCCGCGATGCCGAATCCGAAGAAGAACGTGGGGAGGCATTACAGGGGCGTAAGGCGAAGGCCGTGGGGGAAATTTGCGGCGGAGATAAGGGACTCCGCGCGCAATGGCGCCAGAGTGTGGCTCGGCACTTTCACTACGGCCGAGGAAGCTGCGCTCGCATATGACCGTGCCGCTTACAAGATGAGGGGATCTAGGGCTTTGCTTAACTTCCCCCT

Fln Alignment:

uagpf_mira_c22804___EEDVRQETVAAMPNP-----KKNVGRHYRGVRRRPWGKFAAEIRDSARNGARVWLGTFTTXXXXXXXXXXXXXKMRGSRALLNFP
C0PQI3________________DADIRQETGATPPPPPPPTVKNNAGRHYRGVRQRPWGKFAAEIRDSSRQGARVWLGTFTTAEEAALAYDRAAYKMRGSRALLNFP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain