SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene35126

Length: 94 nt

UniGene Fasta

>uagpf_v2_unigene35126
AGATGTGAGTAACTTGCCACTCCATAGAATGGAGATAGCTGGTCTTGGAGACAGACCTGCAGAGGATTCCTTCAACCCAGTTCTAAATGGTAAT

Ace file of the UniGene uagpf_v2_unigene35126

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11835	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	Similar to CDK5 regulatory subunit-associated protein n=1 Tax=Nicotiana tabacum RepID=Q75WU8_TOBAC	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Blast2go	protein	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	2-alkenal reductase.	EC:1.3.1.74	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	tRNA modification	GO:0006400	Biological Process	81%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	81%
Blast2go	transferase activity	GO:0016740	Molecular Function	81%
Blast2go	4 iron, 4 sulfur cluster binding	GO:0051539	Molecular Function	81%
Blast2go	2-alkenal reductase [NAD(P)] activity	GO:0032440	Molecular Function	81%
Blast2go	mitochondrion	GO:0005739	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	TRAM domain	IPR002792	-	-
Sma3	Methylthiotransferase	IPR005839	-	-
Sma3	tRNA-i(6)A37 modification enzyme MiaB	IPR006463	-	-
Sma3	Elongator protein 3/MiaB/NifB	IPR006638	-	-
Sma3	Radical SAM	IPR007197	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	Methylthiotransferase, N-terminal	IPR013848	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMF7

Fln msg: Distance to subject end: 52 aas, your sequence is shorter than subject: 31 - 332

Fln protein: DVSNLPLHRMEIAGLGDRPAEDSFNPVLNGN

Protein Length: 32

Fln nts: AGATGTGAGTAACTTGCCACTCCATAGAATGGAGATAGCTGGTCTTGGAGACAGACCTGCAGAGGATTCCTTCAACCCAGTTCTAAATGGTAAT

Fln Alignment:

uagpf_mira_c22644___DVSNLPLHRMEIAGLGDRPAEDSFNPVLNGN
B8LMF7________________DVSKLPPHRMEIAGLGDRPAEDALNLAINGN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain