SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene34971

Length: 333 nt

UniGene Fasta

>uagpf_v2_unigene34971
CGTCGTGACCTTGGCTGTCACTCACCTTGCAAATAATAACTTACGTCGTGATCTTGGCTGTTTCGTTGCCGAGTGCACTATGATGCTTTGCGTTTTGCCCCACATATTGAAGCAATGGGAAAATTATTAGTTGAGAGGATGAGATCATATGGCCCATACATAGCCTTGCATTTACGCTATGAGAAAGACATGCTGGCTTTCAGTGGATGTACCTATGGCTTAACAGCTGCTGAAGCTGATGAACTAACGGCCATAAGAGAGAGCACACCATACTGGAAGGTCAAGGAGATAAATTCCACAGAACAGAGGGCTAAGGGACTATGTCCGCTTACT

Ace file of the UniGene uagpf_v2_unigene34971

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3410	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	O-FucT domain containing protein	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	58%
Blast2go	duf246 domain-containing protein at1g04910-like	-	-	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	78%

Source	InterPros	Term	Type	Identity
Sma3	FAS1 domain	IPR000782	-	-
Sma3	Heat shock protein Hsp70	IPR001023	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3		IPR004348	-	-
Sma3	Putative harbinger transposase-derived nuclease	IPR006912	-	-
Sma3	Rhamnogalacturonate lyase	IPR010325	-	-
Sma3	Heat shock protein 70	IPR013126	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ81

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 183 aas, your sequence is shorter than subject: 111 - 634

Fln protein: RRDLGCHSPCK**LTS*SWLFRCRVHYDALRFAPHIEAMGKLLVERMRSYGPYIALHLRYEKDMLAFSGCTYGLTAAEADELTAIRESTPYWKVKEINSTEQRAKGLCPLT

Protein Length: 112

Fln nts: CGTCGTGACCTTGGCTGTCACTCACCTTGCAAATAATAACTTACGTCGTGATCTTGGCTGTTTCGTTGCCGAGTGCACTATGATGCTTTGCGTTTTGCCCCACATATTGAAGCAATGGGAAAATTATTAGTTGAGAGGATGAGATCATATGGCCCATACATAGCCTTGCATTTACGCTATGAGAAAGACATGCTGGCTTTCAGTGGATGTACCTATGGCTTAACAGCTGCTGAAGCTGATGAACTAACGGCCATAAGAGAGAGCACACCATACTGGAAGGTCAAGGAGATAAATTCCACAGAACAGAGGGCTAAGGGACTATGTCCGCTTACT

Fln Alignment:

uagpf_mira_c22451___RCRVHYDALRFAPHIEAMGKLLVERMRSYG-PYIALHLRYEKDMLAFSGCTYGLTAAEADELTAIRESTPYWKVKEINSTEQRAKGLCPLT
B8LQ81________________RCRTNYQALRYTQSIEELGKKLVARMRKNGKPYIALHLRYEKDMLAFTGCAHNLTLGEAEELREMRYNVKHWKEKDIDAEEKRKQGGCPLT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain