SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene34915

Length: 351 nt

UniGene Fasta

>uagpf_v2_unigene34915
CGTCGTGACCTTGGCTGTCACTCAGATTTCTTACAGCCCAATCATCTACAAGGTGTATTAGTAGCTCTATCTGAGCTTGGGTCGCGATTGGAAGACAGCAGGAGGAAGATTTTATCCTTTGAGCCACAAGGCCCAATAGCTGCTGCTTTAGTGCATGAATCTATGGGTGTGCGCATAGCGGCTTGCACTTGCATCAAAAACNTTTCTCGATCTGTTAAGAATCTCCGAACCTCCCTTACGGATGAAGGTGTTGTTTTTCCTCTGTTCAAGTTGTTGGATGACGAGTCCCCAGCGGTGCAGGTTGCGACATTGAGTGCTATCAGTAATGTTGTGCTTGATTTTACACCTCAT

Ace file of the UniGene uagpf_v2_unigene34915

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7853	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	armadillo/beta-catenin-like repeats-containing protein [Arabidopsis thaliana] gb\|AAM13139.1\| unknown protein [Arabidopsis thaliana] gb\|AAP37775.1\| At1g51350 [Arabidopsis thaliana] gb\|AEE32654.1\| armadillo/beta-catenin-like repeats-containing protein [Arab	-	-	39%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	61%
Blast2go	armadillo repeat-containing protein 8-like	-	-	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell part	GO:0044464	Cellular Component	0.0	64%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	HEAT	IPR000357	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9RRY2

Fln msg: Distance to subject end: 229 aas, your sequence is shorter than subject: 117 - 654

Fln protein: RRDLGCHSDFLQPNHLQGVLVALSELGSRLEDSRRKILSFEPQGPIAAALVHESMGVRIAACTCIKNISRSVKNLRTSLTDEGVVFPLFKLLDDESPAVQVATLSAISNVVLDFTPH

Protein Length: 118

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGATTTCTTACAGCCCAATCATCTACAAGGTGTATTAGTAGCTCTATCTGAGCTTGGGTCGCGATTGGAAGACAGCAGGAGGAAGATTTTATCCTTTGAGCCACAAGGCCCAATAGCTGCTGCTTTAGTGCATGAATCTATGGGTGTGCGCATAGCGGCTTGCACTTGCATCAAAAACaTTTCTCGATCTGTTAAGAATCTCCGAACCTCCCTTACGGATGAAGGTGTTGTTTTTCCTCTGTTCAAGTTGTTGGATGACGAGTCCCCAGCGGTGCAGGTTGCGACATTGAGTGCTATCAGTAATGTTGTGCTTGATTTTACACCTCAT

Fln Alignment:

uagpf_mira_c22388___LQGVLVALSELGSRLEDSRRKILSFEPQGPIAAALVHESMGVRIAACTCIKNISRSVKNLRTSLTDEGVVFPLFKLLDDESPAVQVATLSAISNVVLDFTP
A9RRY2________________LEGVLWGLSELCSELEESRRQLLELQVQGSLVAALVHPCEGVKVAACSCITSLSRSVKNLRTSLATEQFVRPLLQLLNDPCPAVQVEALTAVGNVVLDFTP

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain