SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene34776

Length: 204 nt

UniGene Fasta

>uagpf_v2_unigene34776
TGTAGAGTGCAAGAGGGTGGAGGCAACCTTGCCTCTTAAGGCAACTGCTGAGCTTTACTGGGTATGGAGTCTCTCGCAAATATAACATGCTGCCGGGCTTTGGTAATTGTGTATAAGAGCAGTTGTGTACTTCAAGTTGGTGTGGCGTTTGAATCCACTACAGTACAAGGAGAGGCTGCGTCAGTTGATGCCCAAAACTTGTCC

Ace file of the UniGene uagpf_v2_unigene34776

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene35240	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cofactor assembly of complex C [Arabidopsis thaliana] ref\|NP_974051.1\| cofactor assembly of complex C [Arabidopsis thaliana] gb\|AAQ62444.1\| At1g59840 [Arabidopsis thaliana] dbj\|BAD43025.1\| hypothetical protein [Arabidopsis thaliana] dbj\|BAD43131.1\| hypoth	-	-	2.0e-35	49%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	57%
Blast2go	ccb4	-	-	0.0	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytochrome b6f complex assembly	GO:0010190	Biological Process	0.0	70%
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	70%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7TNJ2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 94 aas, your sequence is shorter than subject: 68 - 291

Fln protein: CRVQEGGGNLAS*GNC*ALLGMESLANITCCRALVIVYKSSCVLQVGVAFESTTVQGEAASVDAQNLS

Protein Length: 69

Fln nts: TGTAGAGTGCAAGAGGGTGGAGGCAACCTTGCCTCTTAAGGCAACTGCTGAGCTTTACTGGGTATGGAGTCTCTCGCAAATATAACATGCTGCCGGGCTTTGGTAATTGTGTATAAGAGCAGTTGTGTACTTCAAGTTGGTGTGGCGTTTGAATCCACTACAGTACAAGGAGAGGCTGCGTCAGTTGATGCCCAAAACTTGTCC

Fln Alignment:

uagpf_mira_c22230___ESLANITCCRALVIVYKSSCVLQVGVAFESTTVQGEAASVDAQNL
D7TNJ2________________ESLSVVTCCRSLVILYDSICILQIGMAAESSAGDGEAMAVDATKL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain