SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene34598

Length: 154 nt

UniGene Fasta

>uagpf_v2_unigene34598
GCCAGAGAAGGAGTTACAGAGAGCTGAAAAGCAGATTCTGCAATGCAAACTTGGAATTCGTGAAGCAGTGCATCAGCTTGATCTTCTAAGTTCGGAAGGATCTATTGCAGATGCCGTTATTGATCCAGAAGGACGTGTATTTCATGAACATATA

Ace file of the UniGene uagpf_v2_unigene34598

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene52564	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	HD domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZJ13_MALDO	-	-	2.0e-12	75%
FL-Next	sp=Pathogenesis-related homeodomain protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	58%
Blast2go	pathogenesis-related homeodomain protein	-	-	1.0688e-15	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	1.0688e-15	78%
Blast2go	positive regulation of transcription, DNA-dependent	GO:0045893	Biological Process	1.0688e-15	78%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	1.0688e-15	78%
Blast2go	protein binding	GO:0005515	Molecular Function	1.0688e-15	78%

Source	InterPros	Term	Type	Identity
Sma3	Homeodomain	IPR001356	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3		IPR012287	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P48785

Fln msg: Distance to subject end: 605 aas, your sequence is shorter than subject: 51 - 796

Fln protein: PEKELQRAEKQILQCKLGIREAVHQLDLLSSEGSIADAVIDPEGRVFHEHI

Protein Length: 52

Fln nts: GCCAGAGAAGGAGTTACAGAGAGCTGAAAAGCAGATTCTGCAATGCAAACTTGGAATTCGTGAAGCAGTGCATCAGCTTGATCTTCTAAGTTCGGAAGGATCTATTGCAGATGCCGTTATTGATCCAGAAGGACGTGTATTTCATGAACATATA

Fln Alignment:

uagpf_mira_c22016___PEKELQRAEKQILQCKLGIREAVHQLDLLSSEGSIADAVIDPEGRVFHEHI
P48785________________PDKELERARKEILNCKLGLRDAIRQLDLLSSVGSMEEKVIASDGSIHHDHI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain