SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene34465

Length: 231 nt

UniGene Fasta

>uagpf_v2_unigene34465
TGTTAGGCAACATGGCTAATCTTGGGATACTACAAGTTCACTCACAGCCTTCTCTTCCTGGTCCAATCCAATATGCACCAGATCAACCTCAACAAAAAGTTCAGACAAGAGCTGCTTTCGCATTTCTCCTATCAGAGGAAGGTGACTTTTTCCGAGAGTTCATTTTAGATGAGATAGTTAAAGGTATCGATGCCCTCTCTCGGGAGCAGCTGGCAAATTTGGCTACAATTT

Ace file of the UniGene uagpf_v2_unigene34465

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene517	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	aarF domain-containing kinase [Arabidopsis thaliana] gb\|AAK95302.1\|AF410316_1 AT3g24190/MUJ8_17 [Arabidopsis thaliana] dbj\|BAB01360.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAM47311.1\| AT3g24190/MUJ8_17 [Arabidopsis thaliana] gb\|AEE76870.1\| aa	-	-	75%
FL-Next	tr=Protein ABC1, mitochondrial, putative; Ricinus communis (Castor bean).	-	-	62%
Blast2go	protein	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	84%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	84%
Blast2go	ATP binding	GO:0005524	Molecular Function	84%
Blast2go	chloroplast	GO:0009507	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Aminoglycoside phosphotransferase	IPR002575	-	-
Sma3	ABC-1	IPR004147	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9RWK9

Fln msg: Distance to subject end: 100 aas, your sequence is shorter than subject: 76 - 804

Fln protein: LGNMANLGILQVHSQPSLPGPIQYAPDQPQQKVQTRAAFAFLLSEEGDFFREFILDEIVKGIDALSREQLANLATI

Protein Length: 77

Fln nts: TGTTAGGCAACATGGCTAATCTTGGGATACTACAAGTTCACTCACAGCCTTCTCTTCCTGGTCCAATCCAATATGCACCAGATCAACCTCAACAAAAAGTTCAGACAAGAGCTGCTTTCGCATTTCTCCTATCAGAGGAAGGTGACTTTTTCCGAGAGTTCATTTTAGATGAGATAGTTAAAGGTATCGATGCCCTCTCTCGGGAGCAGCTGGCAAATTTGGCTACAATTT

Fln Alignment:

uagpf_mira_c21857___GNMANLGILQVHSQPSLPGPIQYAPDQPQQKVQTRAAFAFLLSEEGDFFREFILDEIVKGIDALSREQLANLATI
B9RWK9________________GDMAELGILQ--SQNNFPG-VALAAYQPIQPIQTRAALGFLLSERGNFFREFLLDEIVKGIDAVTREQLVQILAI

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain