SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene34396

Length: 128 nt

UniGene Fasta

>uagpf_v2_unigene34396
GCTGCAATGGTACGAGCAGATAAAATTGCAACTGGTCACAATGCAGATGATATAGCAGAGACTGTACTATTAAATATTCTTCGTGGAGATATTGCCAGGCTAAGTAGATGCACATTGATAACAACAGG

Ace file of the UniGene uagpf_v2_unigene34396

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5386	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	cytoplasmic tRNA 2-thiolation protein 1 [Arabidopsis thaliana] sp\|O64862.2\|CTU1_ARATH RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName: Full=Cytoplasmic tRNA adenylyltransferase 1 dbj\|BAC41934.1\| unknown protein [Arabidopsis thaliana] gb\|AAP	-	-	78%
FL-Next	sp=Cytoplasmic tRNA 2-thiolation protein 1; Oryza sativa subsp. japonica (Rice).	-	-	85%
Blast2go	cytoplasmic trna 2-thiolation protein 1	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	tRNA thio-modification	GO:0034227	Biological Process	88%
Blast2go	response to reactive oxygen species	GO:0000302	Biological Process	88%
Blast2go	ATP binding	GO:0005524	Molecular Function	88%
Blast2go	tRNA binding	GO:0000049	Molecular Function	88%
Blast2go	cytoplasm	GO:0005737	Cellular Component	88%
Blast2go	regulation of plant-type cell wall organization or biogenesis	GO:0080157	Biological Process	88%

Source	InterPros	Term	Type	Identity
Sma3	2-thiocytidine tRNA biosynthesis protein, TtcA	IPR012089	-	-
Sma3	tRNA(Ile)-lysidine/2-thiocytidine synthase	IPR011063	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q6Z6G6

Fln msg: Distance to subject end: 151 aas, your sequence is shorter than subject: 42 - 363

Fln protein: AAMVRADKIATGHNADDIAETVLLNILRGDIARLSRCTLITT

Protein Length: 43

Fln nts: GCTGCAATGGTACGAGCAGATAAAATTGCAACTGGTCACAATGCAGATGATATAGCAGAGACTGTACTATTAAATATTCTTCGTGGAGATATTGCCAGGCTAAGTAGATGCACATTGATAACAACAGG

Fln Alignment:

uagpf_mira_c21769___AAMVRADKIATGHNADDIAETVLLNILRGDIARLSRCTLITT
Q6Z6G6________________AALLKVDKIVTGHNADDIAETVLLNILRGDIARLSRCTFITT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain