SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene34336

Length: 134 nt

UniGene Fasta

>uagpf_v2_unigene34336
ATGTTTCTGATTTAGAGATGCAGCCATTTTATAGATTTATCCGGGATACATATATCATTCATCCCATTGCAATGGGCTGTTGCTATATACTCTAGGAGGCCTTCCTTTCATAATTTGGGGCATGGCTGTTCGGA

Ace file of the UniGene uagpf_v2_unigene34336

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14484	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Desaturase delta 9 n=2 Tax=Picea RepID=Q8S4Q3_PICGL	-	-	89%
FL-Next	tr=Desaturase delta 9; Picea glauca (White spruce) (Pinus glauca).	-	-	100%
Blast2go	protein	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Oxidoreductases, Acting on paired donors, with incorporation or reduction of molecular oxygen, With oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water.	EC:1.14.19.-	-	0.0	77%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	alpha-Linolenic acid metabolism	00592		0.0	77%
Blast2go	Biosynthesis of unsaturated fatty acids	01040		0.0	77%

Source	GOs	Term	Type	Identity
Blast2go	unsaturated fatty acid biosynthetic process	GO:0006636	Biological Process	77%
Blast2go	photoinhibition	GO:0010205	Biological Process	77%
Blast2go	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	GO:0016717	Molecular Function	77%
Blast2go	16:0 monogalactosyldiacylglycerol desaturase activity	GO:0009979	Molecular Function	77%
Blast2go	binding	GO:0005488	Molecular Function	77%
Blast2go	helicase activity	GO:0004386	Molecular Function	77%
Blast2go	integral to membrane	GO:0016021	Cellular Component	77%
Blast2go	thylakoid	GO:0009579	Cellular Component	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Fatty acid desaturase, type 1	IPR005804	-	0.0	-
Sma3	Fatty acid desaturase, type 1, core	IPR015876	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q8S4Q3

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 100 aas, your sequence is shorter than subject: 31 - 382

Fln protein: VSDLEMQPFYRFIRDTYIIHPIAMGCCYIL*

Protein Length: 32

Fln nts: ATGTTTCTGATTTAGAGATGCAGCCATTTTATAGATTTATCCGGGATACATATATCATTCATCCCATTGCAATGGGCTGTTGCTATATACTCTAGGAGGCCTTCCTTTCATAATTTGGGGCATGGCTGTTCGGA

Fln Alignment:

uagpf_mira_c21688___VSDLEMQPFYRFIRDTYIIHPIAMG
Q8S4Q3________________VSDLEMQPFYRFIRDTYIIHPIAMG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain