SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene34267

Length: 127 nt

UniGene Fasta

>uagpf_v2_unigene34267
GGCAGGATCTGCTCCAGGTAATGGTTCCAGAGCTGCTGTCGGAGAGGATTTGGTTGCTATGACAAATGTCGCTTGCAAGCAAGAAATCTAATGTCACAGGATGGTAGTGCTGCAACAAAGAGAATGA

Ace file of the UniGene uagpf_v2_unigene34267

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28357	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal	-	-	7.0e-11	20%
FL-Next	tr=F7H2.12 protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	95%
Blast2go	ac034256_12est gb	-	-	0.0	70%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3		IPR015706	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q9LMQ6

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 64 and 64, Distance to subject end: 214 aas, your sequence is shorter than subject: 42 - 1366

Fln protein: AGSAPGNGSRAAVGEDLVAMxxCRLQARNLMSQDGSAATKRM

Protein Length: 43

Fln nts: GGCAGGATCTGCTCCAGGTAATGGTTCCAGAGCTGCTGTCGGAGAGGATTTGGTTGCTATGxxxxxxTGTCGCTTGCAAGCAAGAAATCTAATGTCACAGGATGGTAGTGCTGCAACAAAGAGAATGA

Fln Alignment:

uagpf_mira_c21602___AGSAPGNGSRAAVGEDLVAMTKCRLQARNLMSQDGSAATKRM
Q9LMQ6________________AGSAPGNGSRASVGEDLVAMTKCRLQARNFMTQEGMMATKKM

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain