SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene34200

Length: 420 nt

UniGene Fasta

>uagpf_v2_unigene34200
CGTCGTGACCTTGGCTGTCACTCAAATGTACAGAACAGTCCAACAAATGGCGCGTGCTATGCTTGATGAATCAGGTACTCCTGCTACTTTTTGGGGTGAAGCTGCACATGCTGCGGTAGTTATTCTAAACAAAACAAATGTCCGGGTGAACAGCACTCAAACACTCATGAGCTATGGAAAGGTGAGACTCCTTCTGTGAAGCACTTCAAAATCTTTGGGAGCAAATGTTATATTAAAAATACTGATGAGCAACTTGGCAAGCTTGAACCTAGAGCTGATGAAGGCATACTTCTTGGCTATTCTCCACATAGCAAAGCATACAAGTGCTACAACAAAAGACTTGGCAGGATTGTTGACAGTATTGATGTAGTGGTTGATGAGAAGGGATACATTCCTAGGGAAGTCCATCATGAAGACATC

Ace file of the UniGene uagpf_v2_unigene34200

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10847	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Gag-pol polyprotein n=7 Tax=Glycine max RepID=Q84VH6_SOYBN	-	-	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	42%
Blast2go	gag-pol polyprotein	-	-	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	60%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	HhH-GPD domain	IPR003265	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	BTB/POZ	IPR013069	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 35 aas, your sequence is shorter than subject: 66 - 407

Fln protein: VVTLAVTQMYRTVQQMARAMLDESGTPATFWGEAAHAAVVILNKTNVRVNSTQTLMSYGKVRLLL*

Protein Length: 67

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATGTACAGAACAGTCCAACAAATGGCGCGTGCTATGCTTGATGAATCAGGTACTCCTGCTACTTTTTGGGGTGAAGCTGCACATGCTGCGGTAGTTATTCTAAACAAAACAAATGTCCGGGTGAACAGCACTCAAACACTCATGAGCTATGGAAAGGTGAGACTCCTTCTGTGAAGCACTTCAAAATCTTTGGGAGCAAATGTTATATTAAAAATACTGATGAGCAACTTGGCAAGCTTGAACCTAGAGCTGATGAAGGCATACTTCTTGGCTATTCTCCACATAGCAAAGCATACAAGTGCTACAACAAAAGACTTGGCAGGATTGTTGACAGTATTGATGTAGTGGTTGATGAGAAGGGATACATTCCTAGGGAAGTCCATCATGAAGACATC

Fln Alignment:

uagpf_mira_c21526___RTVQQMARAMLDESGTPATFWGEAAHAAVVILNKT
B8LKX7________________RTLMEMARCMLHARNMDPKFWAEAINTATYIVNRT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain