SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene34154

Length: 278 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene34154
CGTCGTGACCTTGGCTGTCACTCATGGTTAAATACTGCTACAGGTAGTCAAGCTTCTTCCATATGTTAGTGATGAAGATTTATTTGCAGAATTTTACAGGAAAAAGCTTGCACAGAGACTTCTATTTGCTAAAAGTGCAAATGATGATGAAACAAACATATTGACAAAATTGAAGCGACAGTGTGGATACCAGTTTACTTCTAAAATGGAGAGAATGGTACCCTAGTAGTTCACTTCCATTTGAAAAAATTGTAATTGTAACTGGTAATAGGCAAGCT

Ace file of the UniGene uagpf_v2_unigene34154 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27918	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Auxin-resistance protein 6 (Fragment) n=2 Tax=Arabidopsis thaliana RepID=A5YXU7_ARATH	-	-	4.0e-39	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Blast2go	auxin-resistance protein 6	-	-	0.0	88%

Source	GOs	Term	Type	Identity
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	88%
Blast2go	regulation of circadian rhythm	GO:0042752	Biological Process	88%
Blast2go	SCF complex assembly	GO:0010265	Biological Process	88%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	88%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	88%
Blast2go	protein binding	GO:0005515	Molecular Function	88%
Blast2go	condensed nuclear chromosome	GO:0000794	Cellular Component	88%
Blast2go	ubiquitin ligase complex	GO:0000151	Cellular Component	88%
Blast2go	spindle	GO:0005819	Cellular Component	88%
Blast2go	phragmoplast	GO:0009524	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Sma3	Cullin, N-terminal	IPR001373	-	-
Sma3	Protein translocase complex, SecE/Sec61-gamma subunit	IPR001901	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	Cullin, conserved site	IPR016157	-	-
Sma3	Cullin homology	IPR016158	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQB2

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 244 aas, your sequence is shorter than subject: 75 - 744

Fln protein: VVTLAVTHG*ILLQVVKLLPYVSDEDLFAEFYRKKLAQRLLFAKSANDDETNILTKLKRQCGYQFTSKMERMVP*

Protein Length: 76

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGGTTAAATACTGCTACAGGTAGTCAAGCTTCTTCCATATGTTAGTGATGAAGATTTATTTGCAGAATTTTACAGGAAAAAGCTTGCACAGAGACTTCTATTTGCTAAAAGTGCAAATGATGATGAAACAAACATATTGACAAAATTGAAGCGACAGTGTGGATACCAGTTTACTTCTAAAATGGAGAGAATGGTACCCTAGTAGTTCACTTCCATTTGAAAAAATTGTAATTGTAACTGGTAATAGGCAAGCT

Fln Alignment:

uagpf_mira_c21471___LLQVVKLLPYVSDEDLFAEFYRKKLAQRLLFAKSANDD-ETNILTKLKRQCGYQFTSKMERMV
B8LQB2________________LEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain