SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene34107

Length: 212 nt

UniGene Fasta

>uagpf_v2_unigene34107
TCTGCTGTTTGGAAGAAAGGTAACAAGGGTTTATGACCTCAAAGGTTCTGGTCGCTCCCGTTACAATGCAGATTCATCAGGCAACAACAAAGTTCTTCTTGACCAGAATCTCTTAGAGACCATGCCAACTGCTCCAATATTTCTTGGGAATAAAGCCAAGCGCCTTTTGGAGAGAGCAGTCTGGAATGATACTTCATTTCTCGCGTCTTCGC

Ace file of the UniGene uagpf_v2_unigene34107

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3545	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Fyve finger-containing phosphoinositide kinase, fyv1, putative n=1 Tax=Ricinus communis RepID=B9T3Y2_RICCO	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	fyve finger-containing phosphoinositide	-	-	90%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:2.7.1.15-	-	0.0	90%

Source	GOs	Term	Type	Identity
Blast2go	phosphatidylinositol phosphorylation	GO:0046854	Biological Process	90%
Blast2go	cellular protein metabolic process	GO:0044267	Biological Process	90%
Blast2go	ATP binding	GO:0005524	Molecular Function	90%
Blast2go	1-phosphatidylinositol-3-phosphate 5-kinase activity	GO:0000285	Molecular Function	90%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	90%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, FYVE-type	IPR000306	-	-
Sma3	Serine hydroxymethyltransferase	IPR001085	-	-
Sma3	Chaperonin Cpn60/TCP-1	IPR002423	-	-
Sma3	Phosphatidylinositol-4-phosphate 5-kinase, core	IPR002498	-	-
Sma3	Zinc finger, FYVE-related	IPR017455	-	-
Sma3	Intermediate filament protein, conserved site	IPR018039	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ABH6

Fln msg: Distance to subject end: 112 aas, your sequence is shorter than subject: 70 - 318

Fln protein: LLFGRKVTRVYDLKGSGRSRYNADSSGNNKVLLDQNLLETMPTAPIFLGNKAKRLLERAVWNDTSFLASS

Protein Length: 71

Fln nts: TCTGCTGTTTGGAAGAAAGGTAACAAGGGTTTATGACCTCAAAGGTTCTGGTCGCTCCCGTTACAATGCAGATTCATCAGGCAACAACAAAGTTCTTCTTGACCAGAATCTCTTAGAGACCATGCCAACTGCTCCAATATTTCTTGGGAATAAAGCCAAGCGCCTTTTGGAGAGAGCAGTCTGGAATGATACTTCATTTCTCGCGTCTTCGC

Fln Alignment:

uagpf_mira_c21415___LLFGRKVTRVYDLKGSGRSRYNADSSGNNKVLLDQNLLETMPTAPIFLGNKAKRLLERAVWNDTSFLAS
D5ABH6________________LLFGRNVTRVYDLKGSGRSRYNADSSGNNKVLLDQNLLETMPTSPIFLGNKAKRLLERAVWNDTSFLAS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain