SustainPineDB

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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene34096

Length: 387 nt

UniGene Fasta

>uagpf_v2_unigene34096
CGTCGTGACCTTGGCTGTCACTCAATGTTATAACCCAGGTTTCTACTTTGTGAGGCACACTATAACTTGGGTTTCTACTTAGAAACCTACATTACCCAAACTTATGCTCCAAATTTCACAGTTAAACTTCTCCAAACCTTGTCTAATCTTCTACAAATTATATAAACCTTGTCCAACCTCTTGTAGCTCCTCTGCAATCTTCATGTCTTCATCATAAGGAATTATCTAACCAGATACCTTTGCATCATCCTGTAGATGACTTCTTGACATCAATTCCAACAAAGTTTCTAACAACTAATGAACCAACAACCTTCATGTGCCTTATGAACAACATATTTAGTCCATTCTTTGACAAATTTGTATTGGTATATGTTGATGATATTTTGG

Ace file of the UniGene uagpf_v2_unigene34096

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene52818	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative plant disease resistance polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q8LMQ3_ORYSJ	-	-	2.0e-05	64%
FL-Next	tr=OSJNBb0033G08.8 protein; Oryza sativa subsp. japonica (Rice).	-	-	0.0	67%
Blast2go	reverse transcriptase	-	-	8.07979e-07	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q7XSE6

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 17 aas, your sequence is shorter than subject: 128 - 368

Fln protein: S*PWLSLNVITQVSTL*GTL*LGFLLRNLHYPNLCSKFHS*TSPNLV*SSTNYINLVQPLVAPLQSSCLHHKELSNQIPLHHPVDDFLTSIPTKFLTTNEPTTFMCLMNNIFSPFFDKFVLVYVDDIL

Protein Length: 129

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGTTATAACCCAGGTTTCTACTTTGTGAGGCACACTATAACTTGGGTTTCTACTTAGAAACCTACATTACCCAAACTTATGCTCCAAATTTCACAGTTAAACTTCTCCAAACCTTGTCTAATCTTCTACAAATTATATAAACCTTGTCCAACCTCTTGTAGCTCCTCTGCAATCTTCATGTCTTCATCATAAGGAATTATCTAACCAGATACCTTTGCATCATCCTGTAGATGACTTCTTGACATCAATTCCAACAAAGTTTCTAACAACTAATGAACCAACAACCTTCATGTGCCTTATGAACAACATATTTAGTCCATTCTTTGACAAATTTGTATTGGTATATGTTGATGATATTTTGG

Fln Alignment:

uagpf_mira_c21400___FLTTNEPTTFMCLMNNIFSPFFDKFVLVYVDDIL
Q7XSE6________________FGLTNAPATFQCLMNSIFAPFLRKFVLVFMDDIL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain