SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene34072

Length: 397 nt

UniGene Fasta

>uagpf_v2_unigene34072
CGTCGTGACCTTGGCTGTCACTCAGGTTGAACATGCATGTATTTGTTTGACTCGAATTGTAGAATCTTTTGCCTCTTCTTCTGAGAAATTAGATGAACTCTGTAATCATGGCTTGGTTGCACAAGCAGCAAGACTTATATCTGTCGGTACTTCTGGAAGTGGCCAGTCATCTCTTAGTACATCCACATATACGGGTTTGATTAGGATTCTATCTAAATTTGCTGGTGGATCTGCTTTAGCTGCTAAGACACTTCTTGATCTCAATATAAGCGGCATTGTTAGAGATATTCTCACTGGTTCTAGCCTGGTGCCAGGCATGTCAGGTTCCCTTGCTCTGGACAGACCCACTGATCAGATGCATGAAATTGTGACTTTACTGAATGAGCTTCTTCCACCT

Ace file of the UniGene uagpf_v2_unigene34072

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene29979	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to KAK (KAKTUS) isoform 1 n=2 Tax=Vitis vinifera RepID=UPI0001982DD6	-	-	4.0e-24	56%
FL-Next	sp=E3 ubiquitin-protein ligase UPL3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	64%
Blast2go	e3 ubiquitin-protein ligase upl3-like	-	-	7.48785e-28	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA endoreduplication	GO:0042023	Biological Process	7.48785e-28	74%
Blast2go	trichome branching	GO:0010091	Biological Process	7.48785e-28	74%
Blast2go	plasma membrane	GO:0005886	Cellular Component	7.48785e-28	74%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	HEAT	IPR000357	-	-
Sma3	HECT	IPR000569	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q6WWW4

Fln msg: Distance to subject end: 1387 aas, your sequence is shorter than subject: 132 - 1888

Fln protein: VVTLAVTQVEHACICLTRIVESFASSSEKLDELCNHGLVAQAARLISVGTSGSGQSSLSTSTYTGLIRILSKFAGGSALAAKTLLDLNISGIVRDILTGSSLVPGMSGSLALDRPTDQMHEIVTLLNELLPP

Protein Length: 133

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTTGAACATGCATGTATTTGTTTGACTCGAATTGTAGAATCTTTTGCCTCTTCTTCTGAGAAATTAGATGAACTCTGTAATCATGGCTTGGTTGCACAAGCAGCAAGACTTATATCTGTCGGTACTTCTGGAAGTGGCCAGTCATCTCTTAGTACATCCACATATACGGGTTTGATTAGGATTCTATCTAAATTTGCTGGTGGATCTGCTTTAGCTGCTAAGACACTTCTTGATCTCAATATAAGCGGCATTGTTAGAGATATTCTCACTGGTTCTAGCCTGGTGCCAGGCATGTCAGGTTCCCTTGCTCTGGACAGACCCACTGATCAGATGCATGAAATTGTGACTTTACTGAATGAGCTTCTTCCACCT

Fln Alignment:

uagpf_mira_c21368___VEHACICLTRIVESFASSSEKLDELCNHGLVAQAARLIXXXXXXXXXXXXXXXXXXXLIRILSKFAGGSALAAKTLLDLNISGIVRDILTGSSLVPGMSGSLALDRPTDQMHEIVTLLNELLPP
Q6WWW4________________LEYASICLTRIAEAFAPYPEKLDELCNHGLVTQAASLISTSNSGGGQASLSVSTYTGLIRLLSTCASGSPLGFRTLLLLGISSILKDILLGSGVSANASVSPALSRPADQIYEIVNLANELLPP

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain