SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene34070

Length: 205 nt

UniGene Fasta

>uagpf_v2_unigene34070
GTACCCTACCAGCTCCAGCAAATGAGGGAAAAGTAGGCAACTATTGGTTTCATTTAGAGACACAAGCGTATTTTGATGATGAGCAACATTACAAAATGATCAAAGCAATGTGCAGGTTGAGCTGCAGTGTTTGTGACAATACTTGTTGGGCTCAAGAGCCAAGGAAAGAGTTACCAAAGCGTCACCGAGAGTTTAAACATAGAGA

Ace file of the UniGene uagpf_v2_unigene34070

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene12586	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	RING Zn-finger domain-containing protein n=1 Tax=Arabidopsis thaliana RepID=F4IK69_ARATH	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	53%
Blast2go	protein	-	-	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	metal ion binding	GO:0046872	Molecular Function	0.0	65%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, RanBP2-type	IPR001876	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5BNK3

Fln msg: Distance to subject end: 108 aas, your sequence is shorter than subject: 67 - 242

Fln protein: TLPAPANEGKVGNYWFHLETQAYFDDEQHYKMIKAMCRLSCSVCDNTCWAQEPRKELPKRHREFKHR

Protein Length: 68

Fln nts: GTACCCTACCAGCTCCAGCAAATGAGGGAAAAGTAGGCAACTATTGGTTTCATTTAGAGACACAAGCGTATTTTGATGATGAGCAACATTACAAAATGATCAAAGCAATGTGCAGGTTGAGCTGCAGTGTTTGTGACAATACTTGTTGGGCTCAAGAGCCAAGGAAAGAGTTACCAAAGCGTCACCGAGAGTTTAAACATAGAGA

Fln Alignment:

uagpf_mira_c21366___LPAPANEGKVGNYWFHLETQAYFDDEQHYKMIKAMCRLSCSVCDNTCWAQEPRKELPKRHREFKH
A5BNK3________________LPTESREGQLGMYWYHEDTQAFFDDVDHYKMIKAMCRLSCSVCDQ---MEEQSNDGSKRRQKFRN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain