SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene34060

Length: 185 nt

UniGene Fasta

>uagpf_v2_unigene34060
GACTCTTGGAGCAGTAATGTTCAAATTTGTCTCCCCTTTTACCACAGATATTGGTAGACCTGTAAATGTTGTCCATGTTGTGGAGGCCACAAGCAATAAAGGAAATCACTCTCAGTTCAAGTCATATATTTCACTATCCTCTGTGACACCAGGAAAACTGACAGAGGAAATAAAACATCTGAAAG

Ace file of the UniGene uagpf_v2_unigene34060

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene928	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=ATP binding protein, putative; Ricinus communis (Castor bean).	-	-	48%
Blast2go	protein	-	-	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	0.0	60%

Source	InterPros	Term	Type	e value	Identity
Sma3	ArgE/DapE/ACY1/CPG2/YscS, conserved site	IPR001261	-	0.0	-
Sma3	Peptidase M28	IPR007484	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9T3D4

Fln msg: Distance to subject end: 190 aas, your sequence is shorter than subject: 61 - 921

Fln protein: TLGAVMFKFVSPFTTDIGRPVNVVHVVEATSNKGNHSQFKSYISLSSVTPGKLTEEIKHLK

Protein Length: 62

Fln nts: GACTCTTGGAGCAGTAATGTTCAAATTTGTCTCCCCTTTTACCACAGATATTGGTAGACCTGTAAATGTTGTCCATGTTGTGGAGGCCACAAGCAATAAAGGAAATCACTCTCAGTTCAAGTCATATATTTCACTATCCTCTGTGACACCAGGAAAACTGACAGAGGAAATAAAACATCTGAAAG

Fln Alignment:

uagpf_mira_c21355___VMFKFVSPFTTDIGRPVNVVHVVEATSNKGNHSQFKSYISLSSVTPGKLTEEIKHL
B9T3D4________________ILSGILPPFTGDAARAVNVVHVVDTTGSYGNKQDPSSYVSLFSATPGKLTKEAEEI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain