SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene33951

Length: 80 nt

UniGene Fasta

>uagpf_v2_unigene33951
TGAAATTCTACAAGCGTTGCCTGGCAGAGCGCAAGAGAGTTGGTACTGGTTGCAGTGAGGAAATGAATACTCTCTACAGA

Ace file of the UniGene uagpf_v2_unigene33951

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10900	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Lupus la ribonucleoprotein, putative n=1 Tax=Ricinus communis RepID=B9S0U6_RICCO	-	-	0.0	40%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	84%

Source	InterPros	Term	Type	Identity
Sma3	Protein of unknown function DM15	IPR006607	-	-
Sma3	RNA-binding protein Lupus La	IPR006630	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9S1Z0

Fln msg: Distance to subject end: 146 aas, your sequence is shorter than subject: 26 - 277

Fln protein: KFYKRCLAERKRVGTGCSEEMNTLYR

Protein Length: 27

Fln nts: TGAAATTCTACAAGCGTTGCCTGGCAGAGCGCAAGAGAGTTGGTACTGGTTGCAGTGAGGAAATGAATACTCTCTACAGA

Fln Alignment:

uagpf_mira_c21229___KFYKRCLAERKRVGTGCSEEMNTLYR
A9S1Z0________________KYYKRCLVERKRVGIGCSEEMNTLFR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain