SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene33942

Length: 362 nt

UniGene Fasta

>uagpf_v2_unigene33942
CGTCGTGACCTTGGCTGTCACTCATGCATATCATGAATCGGTTGTACACTCGCTTTGGAGATCCGAAGCTTTTAAAACCAGAGAACAAGCCTTTTGCTGAGATGTTTCAAAAGCATTATGCTGGGAAGATTTTAGAGTGTCATTTGAATCTGTTGAATGTAATTCGACAAGGTGGCTACCTTCCAGATAGGGTGACCAATCTTGTTCTTCAATATTTGAGTAGCAGTATTTCCAAGTCCAATACGTACCAGCTGTTAAAGCCAGAACTTGATATAGTGCTTTTTGAGATCATATTCCCTCTTATGTGTTTCAATGACAATGATGAGAAGCTTTGGCGTGAAGATCCTCATGAATATGTTAGG

Ace file of the UniGene uagpf_v2_unigene33942

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11269	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Importin-7, putative n=3 Tax=rosids RepID=B9SP38_RICCO	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	78%
Blast2go	probable importin-7 homolog	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	cell proliferation	GO:0008283	Biological Process	87%
Blast2go	protein import into nucleus, docking	GO:0000059	Biological Process	87%
Blast2go	importin-alpha export receptor activity	GO:0008262	Molecular Function	87%
Blast2go	nuclear pore	GO:0005643	Cellular Component	87%
Blast2go	cytoplasm	GO:0005737	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Importin-beta, N-terminal	IPR001494	-	-
Sma3	Lipocalin	IPR002345	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6I4A5

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 660 aas, your sequence is shorter than subject: 120 - 1034

Fln protein: S*PWLSLMHIMNRLYTRFGDPKLLKPENKPFAEMFQKHYAGKILECHLNLLNVIRQGGYLPDRVTNLVLQYLSSSISKSNTYQLLKPELDIVLFEIIFPLMCFNDNDEKLWREDPHEYVR

Protein Length: 121

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGCATATCATGAATCGGTTGTACACTCGCTTTGGAGATCCGAAGCTTTTAAAACCAGAGAACAAGCCTTTTGCTGAGATGTTTCAAAAGCATTATGCTGGGAAGATTTTAGAGTGTCATTTGAATCTGTTGAATGTAATTCGACAAGGTGGCTACCTTCCAGATAGGGTGACCAATCTTGTTCTTCAATATTTGAGTAGCAGTATTTCCAAGTCCAATACGTACCAGCTGTTAAAGCCAGAACTTGATATAGTGCTTTTTGAGATCATATTCCCTCTTATGTGTTTCAATGACAATGATGAGAAGCTTTGGCGTGAAGATCCTCATGAATATGTTAGG

Fln Alignment:

uagpf_mira_c21219___MHIMNRLYTRFGDPKLLKPENKPFAEMFQKHYAGKILECHLNLLNVIRQGGYLPDRVTNLVLQYLSSSISKSNTYQLLKPELDIVLFEIIFPLMCFNDNDEKLWREDPHEYVR
F6I4A5________________VHILNRLYTRFGDLKLQNPENRAFAQMFQKNFAGKILECHLNLLNVIRMGGYLPDRVINLILQYLSNSISKMSMYQLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain