SustainPineDB

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Assembly info
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene33855

Length: 356 nt

UniGene Fasta

>uagpf_v2_unigene33855
CGTCGTGACCTTGGCTGTCACTCAATTGTGATTGCTGCAACCAATCGTGGTGATTTGCTTGATTCTGCTTTGTTGCGCCCGGGGCGTTTTGATCGACAGGTATCTGTGGATGTACCAGATGTTAAAGGAAGGACAGAGATTTTGAAAGTGCATGGTAGCAATAAGAAGTTTGATAGTGACGTTTCACTAGGAGTCATTGCAATGAGAACCCCTGGCTTCAGTGGAGCAGATCTTGCAAATTTATGAATGAAGCAGCTATTCTAGCTGGGCGCGTGGGAAGCAGCAATTTCTGCCAAGGAATAGATGACTCTATAGACAGGATTGTTGCTGGAATGGAGGGAACGATAATGACAGAT

Ace file of the UniGene uagpf_v2_unigene33855

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3562	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	ATP-dependent zinc metalloprotease FTSH 2, chloroplastic n=6 Tax=Poaceae RepID=FTSH2_ORYSJ	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	atp-dependent zinc metalloprotease ftsh chloroplastic-like	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Metalloendopeptidases.	EC:3.4.24.-	-	0.0	91%
Blast2go	Microtubule-severing ATPase.	EC:3.6.4.3	-	0.0	91%

Source	GOs	Term	Type	Identity
Blast2go	ATP catabolic process	GO:0006200	Biological Process	91%
Blast2go	PSII associated light-harvesting complex II catabolic process	GO:0010304	Biological Process	91%
Blast2go	cell division	GO:0051301	Biological Process	91%
Blast2go	proteolysis	GO:0006508	Biological Process	91%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	91%
Blast2go	ATP-dependent peptidase activity	GO:0004176	Molecular Function	91%
Blast2go	metalloendopeptidase activity	GO:0004222	Molecular Function	91%
Blast2go	ATP binding	GO:0005524	Molecular Function	91%
Blast2go	microtubule-severing ATPase activity	GO:0008568	Molecular Function	91%
Blast2go	integral to membrane	GO:0016021	Cellular Component	91%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	91%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	91%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQ75

Fln msg: Overlapping hits, possible frame ERROR between 300 and 243, Distance to subject end: 209 aas, your sequence is shorter than subject: 119 - 695

Fln protein: RRDLGCHSIVIAATNRGDLLDSALLRPGRFDRQVSVDVPDVKGRTEILKVHGSNKKFDSDVSLGVIAMRTPGFSGADLANxxxxxxxxxxxxxxxxxxxxxDDSIDRIVAGMEGTIMTD

Protein Length: 120

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTGTGATTGCTGCAACCAATCGTGGTGATTTGCTTGATTCTGCTTTGTTGCGCCCGGGGCGTTTTGATCGACAGGTATCTGTGGATGTACCAGATGTTAAAGGAAGGACAGAGATTTTGAAAGTGCATGGTAGCAATAAGAAGTTTGATAGTGACGTTTCACTAGGAGTCATTGCAATGAGAACCCCTGGCTTCAGTGGAGCAGATCTTGCAAATxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGATGACTCTATAGACAGGATTGTTGCTGGAATGGAGGGAACGATAATGACAGAT

Fln Alignment:

uagpf_mira_c21113___IVIAATNRGDLLDSALLRPGRFDRQVSVDVPDVKGRTEILKVHGSNKKFDSDVSLGVIAMRTPGFSGADLANLxxxxxxxxxxxxxxxxxxxxIDDSIDRIVAGMEGTIMTD
C0PQ75________________IVIAATNRADILDAALLRPGRFDRQVSVDVPDVKGRTEILKVHGGNKKFDSDVSLGVIAMRTPGFSGADLANLxxxxxxxxxxxxxxxxxxxxIDDSIDRIVAGMEGTIMTD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain