SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene33789

Length: 187 nt

UniGene Fasta

>uagpf_v2_unigene33789
TGGTCTGTCATATCACAATCTTTGCCAGGTCGCATTGGTAAACAATGTCGTGAAAGATGGCACAATCATCTCAATCCCGAAATAAAGAAAGATGCATGGAGTCAGGACGAAGAGTTGGCACTTATCCGTGCTCACCAATTATACGGGAACAAGTGGGCAGAAATAGCAAAGTTCTTACCGTGGAAGG

Ace file of the UniGene uagpf_v2_unigene33789

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11758	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	Predicted protein (Fragment) n=2 Tax=Physcomitrella patens RepID=A9RYR4_PHYPA	-	-	86%
FL-Next	tr=R2R3-MYB transcription factor MYB6; Picea glauca (White spruce) (Pinus glauca).	-	-	49%
Blast2go	myb-related protein 3r-1-like	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	regulation of DNA endoreduplication	GO:0032875	Biological Process	89%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	89%
Blast2go	transcription coactivator activity	GO:0003713	Molecular Function	89%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	89%
Blast2go	DNA binding	GO:0003677	Molecular Function	89%
Blast2go	nucleus	GO:0005634	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Rad9	IPR007268	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	Myb-like domain	IPR017877	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A5JYF0

Fln msg: Distance to subject end: 251 aas, your sequence is shorter than subject: 62 - 350

Fln protein: WSVISQSLPGRIGKQCRERWHNHLNPEIKKDAWSQDEELALIRAHQLYGNKWAEIAKFLPWK

Protein Length: 63

Fln nts: TGGTCTGTCATATCACAATCTTTGCCAGGTCGCATTGGTAAACAATGTCGTGAAAGATGGCACAATCATCTCAATCCCGAAATAAAGAAAGATGCATGGAGTCAGGACGAAGAGTTGGCACTTATCCGTGCTCACCAATTATACGGGAACAAGTGGGCAGAAATAGCAAAGTTCTTACCGTGGAAGG

Fln Alignment:

uagpf_mira_c21032___WSVISQSLPGRIGKQCRERWHNHLNPEIKKDAWSQDEELALIRAHQLYGNKWAEIAKFL
A5JYF0________________WSLISKAIPGRSGKSCRLRWCNQLSPQVEHRPFTPEEDATIIRAHAQHGNKWATIARML

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain