UniGene Name: uagpf_v2_unigene33736
Length: 246 nt
UniGene Fasta |
---|
>uagpf_v2_unigene33736
C |
Ace file of the UniGene uagpf_v2_unigene33736 |
---|
If you push the Download ace button, you will download an ace file of this UniGene.
To watch this ACE file you will need an ACE viewer program as Tablet:
Go to the Tablet ACE viewer Web
Annotations |
---|
Parent Assembly | Parent UniGene | Reads (related/total) |
---|---|---|
SustainPine v2.0 | sp_v2.0_unigene28419 | 2/2 |
Source | Descriptions | Term | Type | e value | Identity |
---|---|---|---|---|---|
AutoFact | Endoribonuclease Dicer homolog 1 n=4 Tax=Poaceae RepID=DCL1_ORYSJ | - | - | 0.0 | 44% |
Blast2go | endoribonuclease dicer homolog 1-like | - | - | 0.0 | 65% |
Source | GOs | Term | Type | e value | Identity |
---|---|---|---|---|---|
Blast2go | embryonic pattern specification | GO:0009880 | Biological Process | 0.0 | 65% |
Blast2go | suspensor development | GO:0010098 | Biological Process | 0.0 | 65% |
Blast2go | production of lsiRNA involved in RNA interference | GO:0010599 | Biological Process | 0.0 | 65% |
Blast2go | mRNA cleavage involved in gene silencing by miRNA | GO:0035279 | Biological Process | 0.0 | 65% |
Blast2go | vegetative to reproductive phase transition of meristem | GO:0010228 | Biological Process | 0.0 | 65% |
Blast2go | production of miRNAs involved in gene silencing by miRNA | GO:0035196 | Biological Process | 0.0 | 65% |
Blast2go | production of ta-siRNAs involved in RNA interference | GO:0010267 | Biological Process | 0.0 | 65% |
Blast2go | virus induced gene silencing | GO:0009616 | Biological Process | 0.0 | 65% |
Blast2go | cytokinesis | GO:0000910 | Biological Process | 0.0 | 65% |
Blast2go | protein binding | GO:0005515 | Molecular Function | 0.0 | 65% |
Blast2go | double-stranded RNA binding | GO:0003725 | Molecular Function | 0.0 | 65% |
Blast2go | nuclear dicing body | GO:0010445 | Cellular Component | 0.0 | 65% |
Blast2go | regulation of seed maturation | GO:2000034 | Biological Process | 0.0 | 65% |
Source | InterPros | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | Ribonuclease III domain | IPR000999 | - | 0.0 | - |
Sma3 | Double-stranded RNA-binding | IPR001159 | - | 0.0 | - |
Sma3 | Legume lectin domain | IPR001220 | - | 0.0 | - |
Sma3 | Helicase, C-terminal | IPR001650 | - | 0.0 | - |
Sma3 | Argonaute/Dicer protein, PAZ | IPR003100 | - | 0.0 | - |
Sma3 | Ubiquitin fusion degradation protein UFD1 | IPR004854 | - | 0.0 | - |
Sma3 | Dicer double-stranded RNA-binding fold | IPR005034 | - | 0.0 | - |
Sma3 | Helicase/UvrB domain | IPR006935 | - | 0.0 | - |
Sma3 | Peptidase, C-terminal, archaeal/bacterial | IPR007280 | - | 0.0 | - |
Sma3 | DNA/RNA helicase, DEAD/DEAH box type, N-terminal | IPR011545 | - | 0.0 | - |
Sma3 | Helicase, superfamily 1/2, ATP-binding domain | IPR014001 | - | 0.0 | - |
Sma3 | IPR014021 | - | 0.0 | - | |
Sma3 | Double-stranded RNA-binding-like | IPR014720 | - | 0.0 | - |
Sma3 | Zinc finger, C2H2-like | IPR015880 | - | 0.0 | - |
Sma3 | Aldo/keto reductase, conserved site | IPR018170 | - | 0.0 | - |
Sma3 | Extracellular solute-binding protein, family 3, conserved site | IPR018313 | - | 0.0 | - |
Full-Lengther Next Prediction |
---|
Fln status: Coding
Fln database: testcode
Fln msg:
Test code: 1
Test Code was used to find complete genes when there was not found a reliable orthologue. The best ORF (Open Reading Frame) is shown, and only ORFs > 200pb were analyzed. Your ORF will be more reliable if a stop codon was found before the start codon. A Test Code value > 0.95 means the ORF is probably coding. A Test Code value < 0.74 means the ORF is probably non-coding. Test Code values in between 0.74 and 0.95 mean it is uncertain whether the ORF is coding or not.
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain