SustainPineDB

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Assembly info
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene33686

Length: 320 nt

UniGene Fasta

>uagpf_v2_unigene33686
CGTCGTGACCTTGGCTGTCACTCAGGTCCTGCTGCTTATTTTCTTGAAAAAAGGAACGGCCACCGCTACTCTCTCGTTTCTGGTTCAATTCTTCCTGCTTGCATTATGCGGGATAACTGCAAATCAAGGATTCTACCTGCTGGGTTTGTATTATACAACTCCCACATTTGCGTCTGCCATACAGAACTCTGTGCCTGCTATCACCTTTATCATGGCGGCAATTCTGGGGTAACCTTTAGCAGCGACCATTTTCTCTGTGATATTGTGTTTGCAAAGCAAATCACTTTCCATTGTTGTAGTATTTTTTTAAGATACTGATC

Ace file of the UniGene uagpf_v2_unigene33686

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15331	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Auxin-induced protein 5NG4 n=1 Tax=Pinus taeda RepID=5NG4_PINTA	-	-	68%
FL-Next	sp=Auxin-induced protein 5NG4; Pinus taeda (Loblolly pine).	-	-	66%
Blast2go	auxin-induced protein 5ng4-like	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	secondary cell wall biogenesis	GO:0009834	Biological Process	80%
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	80%
Blast2go	auxin mediated signaling pathway	GO:0009734	Biological Process	80%
Blast2go	plant-type vacuole membrane	GO:0009705	Cellular Component	80%
Blast2go	cell cortex	GO:0005938	Cellular Component	80%
Blast2go	plasma membrane	GO:0005886	Cellular Component	80%
Blast2go	positive regulation of tryptophan metabolic process	GO:0090358	Biological Process	80%
Blast2go	positive regulation of auxin metabolic process	GO:0090355	Biological Process	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Drug/metabolite transporter	IPR000620	-	0.0	-
Sma3	Phospholipase A2, active site	IPR013090	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q6J163

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 249 aas, your sequence is shorter than subject: 77 - 410

Fln protein: VVTLAVTQVLLLIFLKKGTATATLSFLVQFFLLALCGITANQGFYLLGLYYTTPTFASAIQNSVPAITFIMAAILG*

Protein Length: 78

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTCCTGCTGCTTATTTTCTTGAAAAAAGGAACGGCCACCGCTACTCTCTCGTTTCTGGTTCAATTCTTCCTGCTTGCATTATGCGGGATAACTGCAAATCAAGGATTCTACCTGCTGGGTTTGTATTATACAACTCCCACATTTGCGTCTGCCATACAGAACTCTGTGCCTGCTATCACCTTTATCATGGCGGCAATTCTGGGGTAACCTTTAGCAGCGACCATTTTCTCTGTGATATTGTGTTTGCAAAGCAAATCACTTTCCATTGTTGTAGTATTTTTTTAAGATACTGATC

Fln Alignment:

uagpf_mira_c20912___KKGTATATLSFLVQFFLLALCGITANQGFYLLGLYYTTPTFASAIQNSVPAITFIMAAIL
Q6J163________________KKERPALTLSFLIQFFLLALCGITGQSRILSLRIVLHIPTFASAIQNSVPAITFIMAAAL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain