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UniGene Name: uagpf_v2_unigene33610
Length: 244 nt
 UniGene Fasta
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Ace file of the UniGene uagpf_v2_unigene33610
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If you push the Download ace button, you will download an ace file of this UniGene.
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Go to the Tablet ACE viewer Web
| Annotations |
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| Parent Assembly | Parent UniGene | Reads (related/total) |
|---|---|---|
| SustainPine v2.0 | sp_v2.0_unigene26432 | 2/2 |
| Source | Descriptions | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| AutoFact | Ubiquitin-60S ribosomal protein L40-1 n=69 Tax=Eukaryota RepID=RL40A_ARATH | - | - | 0.0 | 99% |
| Blast2go | ubiquitin a-52 residue ribosomal protein fusion product 1 | - | - | 0.0 | 98% |
| Source | GOs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Blast2go | viral reproduction | GO:0016032 | Biological Process | 0.0 | 98% |
| Blast2go | negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle | GO:0051436 | Biological Process | 0.0 | 98% |
| Blast2go | MyD88-independent toll-like receptor signaling pathway | GO:0002756 | Biological Process | 0.0 | 98% |
| Blast2go | regulation of signal transduction | GO:0009966 | Biological Process | 0.0 | 98% |
| Blast2go | transmembrane receptor protein tyrosine kinase signaling pathway | GO:0007169 | Biological Process | 0.0 | 98% |
| Blast2go | translational elongation | GO:0006414 | Biological Process | 0.0 | 98% |
| Blast2go | anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | Biological Process | 0.0 | 98% |
| Blast2go | induction of apoptosis by extracellular signals | GO:0008624 | Biological Process | 0.0 | 98% |
| Blast2go | anti-apoptosis | GO:0006916 | Biological Process | 0.0 | 98% |
| Blast2go | reproductive process | GO:0022414 | Biological Process | 0.0 | 98% |
| Blast2go | MyD88-dependent toll-like receptor signaling pathway | GO:0002755 | Biological Process | 0.0 | 98% |
| Blast2go | RNA metabolic process | GO:0016070 | Biological Process | 0.0 | 98% |
| Blast2go | interphase of mitotic cell cycle | GO:0051329 | Biological Process | 0.0 | 98% |
| Blast2go | positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle | GO:0051437 | Biological Process | 0.0 | 98% |
| Blast2go | cellular membrane organization | GO:0016044 | Biological Process | 0.0 | 98% |
| Blast2go | cellular response to stress | GO:0033554 | Biological Process | 0.0 | 98% |
| Blast2go | MAPK cascade | GO:0000165 | Biological Process | 0.0 | 98% |
| Blast2go | multicellular organismal process | GO:0032501 | Biological Process | 0.0 | 98% |
| Blast2go | protein binding | GO:0005515 | Molecular Function | 0.0 | 98% |
| Blast2go | nucleoplasm | GO:0005654 | Cellular Component | 0.0 | 98% |
| Blast2go | cytosolic large ribosomal subunit | GO:0022625 | Cellular Component | 0.0 | 98% |
| Blast2go | endosome membrane | GO:0010008 | Cellular Component | 0.0 | 98% |
| Blast2go | nucleolus | GO:0005730 | Cellular Component | 0.0 | 98% |
| Source | InterPros | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | Ribosomal protein L40e | IPR001975 | - | 0.0 | - |
| Sma3 | Ubiquitin | IPR000626 | - | 0.0 | - |
| Full-Lengther Next Prediction |
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Fln status: unknown
Fln database: testcode
Fln msg:
Test code: 0
Test Code was used to find complete genes when there was not found a reliable orthologue. The best ORF (Open Reading Frame) is shown, and only ORFs > 200pb were analyzed. Your ORF will be more reliable if a stop codon was found before the start codon. A Test Code value > 0.95 means the ORF is probably coding. A Test Code value < 0.74 means the ORF is probably non-coding. Test Code values in between 0.74 and 0.95 mean it is uncertain whether the ORF is coding or not.
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain
