SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene33500

Length: 214 nt

UniGene Fasta

>uagpf_v2_unigene33500
GTAACATTTGCAAGCTCGGTCAAGATGCAACATTCATTCCTTACAGGAATGGCTTCAGGTATAGCTATTATTTTAGCTGCGTGGAGACCATTGCAGTTATGGGTTGGAGGTAAAATTGGCTTATTCTATGATATAAGCCTGCTTGTGGGAGGTGCTTTTTTCTTTCATGTGATAAGCCGTATGACAAGTCTGAATGTGTTCCAAGGCCGAGCTG

Ace file of the UniGene uagpf_v2_unigene33500

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2589	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	ZIP metal ion transporter-like protein [Arabidopsis thaliana] sp\|Q9C9Z1.2\|ZTP50_ARATH RecName: Full=Putative zinc transporter At3g08650 gb\|AEE74659.1\| ZIP metal ion transporter-like protein [Arabidopsis thaliana]	-	-	58%
FL-Next	Isoform 2 of Putative zinc transporter At3g08650 OS=Arabidopsis thaliana GN=At3g08650	-	-	48%
Blast2go	zinc transporter at3g08650-like	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	metal ion transport	GO:0030001	Biological Process	78%
Blast2go	transmembrane transport	GO:0055085	Biological Process	78%
Blast2go	metal ion transmembrane transporter activity	GO:0046873	Molecular Function	78%
Blast2go	membrane	GO:0016020	Cellular Component	78%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	PEP-utilising enzyme, C-terminal	IPR000121	-	-
Sma3		IPR000173	-	-
Sma3	Zinc/iron permease	IPR003689	-	-
Sma3		IPR008512	-	-
Sma3	Pyruvate/Phosphoenolpyruvate kinase	IPR015813	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9C9Z1-2

Fln msg: Distance to subject end: 177 aas, your sequence is shorter than subject: 71 - 595

Fln protein: VTFASSVKMQHSFLTGMASGIAIILAAWRPLQLWVGGKIGLFYDISLLVGGAFFFHVISRMTSLNVFQGRA

Protein Length: 72

Fln nts: GTAACATTTGCAAGCTCGGTCAAGATGCAACATTCATTCCTTACAGGAATGGCTTCAGGTATAGCTATTATTTTAGCTGCGTGGAGACCATTGCAGTTATGGGTTGGAGGTAAAATTGGCTTATTCTATGATATAAGCCTGCTTGTGGGAGGTGCTTTTTTCTTTCATGTGATAAGCCGTATGACAAGTCTGAATGTGTTCCAAGGCCGAGCTG

Fln Alignment:

uagpf_mira_c20697___VTFASSVKMQHSFLTGMASGIAIILAAWRPLQLWVGGKIGLFYDISLLVGGAFFFHVISRMTSLNV
Q9C9Z1-2______________VASAVTFRLQHALLMGVASGIAFVLGLWRPLQLLLSAKMGLIPLVSLLAIGAGLSHFTS-STILNV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain