SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene33456

Length: 242 nt

UniGene Fasta

>uagpf_v2_unigene33456
CAAAGAGGCTTCTAAATAGCAAGGGAGAACTGAATCAGGAGCTTCAAGTTTTCCAAAGTTCACCTGAAATTTTAGGGTGGCTTGAAGATGCGGCTCTATTTGCAGCCATTGATAATACTCTCGATGCTTGCTCTTGGTCAGACTGGCCTCAACCTCTCAGGGATCGGCATCTTGTGGCTCTTGAAGTTGTATACCAAAATCAGAAGGAATTTATAGATGTATTTATTGCCCAACAGTTTCGC

Ace file of the UniGene uagpf_v2_unigene33456

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8976	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Chain A, Structure Determination And Refinement At 1.8 A Resolution Of Disproportionating Enzyme From Potato	-	-	66%
FL-Next	sp=4-alpha-glucanotransferase, chloroplastic/amyloplastic; Solanum tuberosum (Potato).	-	-	63%
Blast2go	4-alpha- chloroplastic amyloplastic-like	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	4-alpha-glucanotransferase.	EC:2.4.1.25	-	0.0	79%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	79%
Blast2go	Metabolic pathways	01100		0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	maltose catabolic process	GO:0000025	Biological Process	79%
Blast2go	glucose metabolic process	GO:0006006	Biological Process	79%
Blast2go	starch catabolic process	GO:0005983	Biological Process	79%
Blast2go	cation binding	GO:0043169	Molecular Function	79%
Blast2go	4-alpha-glucanotransferase activity	GO:0004134	Molecular Function	79%
Blast2go	amyloplast	GO:0009501	Cellular Component	79%
Blast2go	chloroplast	GO:0009507	Cellular Component	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycoside hydrolase, family 77	IPR003385	-	0.0	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q06801

Fln msg: Distance to subject end: 305 aas, your sequence is shorter than subject: 80 - 576

Fln protein: KRLLNSKGELNQELQVFQSSPEILGWLEDAALFAAIDNTLDACSWSDWPQPLRDRHLVALEVVYQNQKEFIDVFIAQQFR

Protein Length: 81

Fln nts: CAAAGAGGCTTCTAAATAGCAAGGGAGAACTGAATCAGGAGCTTCAAGTTTTCCAAAGTTCACCTGAAATTTTAGGGTGGCTTGAAGATGCGGCTCTATTTGCAGCCATTGATAATACTCTCGATGCTTGCTCTTGGTCAGACTGGCCTCAACCTCTCAGGGATCGGCATCTTGTGGCTCTTGAAGTTGTATACCAAAATCAGAAGGAATTTATAGATGTATTTATTGCCCAACAGTTTCGC

Fln Alignment:

uagpf_mira_c20638___KRLLNSKGELNQELQVFQSSPEILGWLEDAALFAAIDNTLDACSWSDWPQPLRDRHLVALEVVYQNQKEFIDVFIAQQF
Q06801________________KRLLSSEGELKDQLENFRRDPNISSWLEDAAYFAAIDNSVNTISWYDWPEPLKNRHLAALEEVYQSEKDFIDIFIAQQF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain