SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene33402

Length: 196 nt

UniGene Fasta

>uagpf_v2_unigene33402
TGTATCGACCTTGGCTGTCACTCAAAATTAGCTGACAGTCTCGGTAAAATAGAGAAGCAGATTTTCTTAGACATTGTCTGCTTTTTTATAGGAGAAAACAAAGATAGAGCTATAAGATTGTGGGACGGAATGGAGTGGGGAGGATGGCTTGGTCTTCGGAACCTGGAGAGCAGATGTCTGGTGGAAATAGACGATC

Ace file of the UniGene uagpf_v2_unigene33402

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6364	1/2
SustainPine v2.0	sp_v2.0_unigene8774	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	Putative TIR/NBS/LRR disease resistance protein (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8I7_PINTA	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	62%
Blast2go	tmv resistance protein n	-	-	64%

Source	ECs	Term	Type	e value	Identity
Blast2go	Nucleoside-triphosphatase.	EC:3.6.1.15	-	0.0	64%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	64%
Blast2go	Thiamine metabolism	00730	64%
Blast2go	Metabolic pathways	01100	64%

Source	GOs	Term	Type	Identity
Blast2go	innate immune response	GO:0045087	Biological Process	64%
Blast2go	apoptotic process	GO:0006915	Biological Process	64%
Blast2go	signal transduction	GO:0007165	Biological Process	64%
Blast2go	ATP binding	GO:0005524	Molecular Function	64%
Blast2go	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	64%
Blast2go	transmembrane signaling receptor activity	GO:0004888	Molecular Function	64%
Blast2go	intrinsic to membrane	GO:0031224	Cellular Component	64%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRB4

Fln msg: Distance to subject end: 66 aas, your sequence is shorter than subject: 65 - 579

Fln protein: CIDLGCHSKLADSLGKIEKQIFLDIVCFFIGENKDRAIRLWDGMEWGGWLGLRNLESRCLVEIDD

Protein Length: 66

Fln nts: TGTATCGACCTTGGCTGTCACTCAAAATTAGCTGACAGTCTCGGTAAAATAGAGAAGCAGATTTTCTTAGACATTGTCTGCTTTTTTATAGGAGAAAACAAAGATAGAGCTATAAGATTGTGGGACGGAATGGAGTGGGGAGGATGGCTTGGTCTTCGGAACCTGGAGAGCAGATGTCTGGTGGAAATAGACGATC

Fln Alignment:

uagpf_mira_c20567___DSLGKIEKQIFLDIVCFFIGENKDRAIRLWDGMEWGGWLGLRNLESRCLVEID
B8LRB4________________DALDEDERQIFLDIACFFIGEDRDTAIKIWEESEWSGELGLWKLENRCLVEVD

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain