SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene33393

Length: 231 nt

UniGene Fasta

>uagpf_v2_unigene33393
TTGAAGTCTGCTTTCACCGGAATGCATCTCTTGGACTTGGGCAATGCCCCAAGGATGAGTGGAAAATGCTGCAAAAGGGGCTATGGAGTGTTACCATGTCACCTTATGAGACTAGATTTGTTGATATTAGGGTTATAGATTCATTTTCCATCTCTGTTACAATCTCAGTTGACGAAGAGTTCCGAGTTTGGCGTTTAGTTTTCTTGGCTTCAGGTGTAGTAATGCTGTTTT

Ace file of the UniGene uagpf_v2_unigene33393

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8717	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF2215 multi-domain protein	-	-	4.0e-38	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Blast2go	protein	-	-	0.0	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastid	GO:0009536	Cellular Component	0.0	75%
Blast2go	membrane	GO:0016020	Cellular Component	0.0	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	0.0	-
Sma3		IPR017909	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQC5

Fln msg: Distance to subject end: 328 aas, your sequence is shorter than subject: 76 - 505

Fln protein: EVCFHRNASLGLGQCPKDEWKMLQKGLWSVTMSPYETRFVDIRVIDSFSISVTISVDEEFRVWRLVFLASGVVMLF

Protein Length: 77

Fln nts: TTGAAGTCTGCTTTCACCGGAATGCATCTCTTGGACTTGGGCAATGCCCCAAGGATGAGTGGAAAATGCTGCAAAAGGGGCTATGGAGTGTTACCATGTCACCTTATGAGACTAGATTTGTTGATATTAGGGTTATAGATTCATTTTCCATCTCTGTTACAATCTCAGTTGACGAAGAGTTCCGAGTTTGGCGTTTAGTTTTCTTGGCTTCAGGTGTAGTAATGCTGTTTT

Fln Alignment:

uagpf_mira_c20557___EVCFHRNASLGLGQCPKDEWKMLQKGLWSVTMSPYETRFVDIRVIDSFSISVTISVDEEFRVWRLVFLASGVVML
B8LQC5________________EICVHRNASLALGQCLQNEWKALEKGLWTGLMSPFETKFIDIRMPGTLFDSLTISVEEEFRPYRLVFLGLGLVML

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain