SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene33385

Length: 449 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene33385
ACCAACCCCTACAATTCATACAGACACAAGGGACGTTGCAGAATGATCGCCATCAGAAGTGGTCCACATACCTGCAACAGTTCCATTTGAATATCAAGTATAAGAAGGGCAACACCAATAATGTTGAATATTCCCTCAGTTGACCATTGATCATGGCGTTAACCACCATGCTCAACTCTTGTGGGCACGAGACTTTTGATTGGCCACTTCTCTATAAAATAAACCCAGAATTCGGTGACAGATACTAGACACTCTTGGAGGGTCAGCATGTTCAATATTTTCACCTCCAGGATGCCCTATTATGCCACCTAGGTCACCTTTGTGTTCCTTCAAGCGAGTGTGTCAAGATGATTTGGGAAACACACTACATTCGGGCTGTTGGACATTTCGGGGTCGAGAAAACAATGGCAGTACTACAAAAGTATTTCTATTGGTCGCATCTTTGACAG

Ace file of the UniGene uagpf_v2_unigene33385 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8067	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Integrase core domain containing protein n=1 Tax=Asparagus officinalis RepID=Q2AA43_ASPOF	-	-	41%
FL-Next	tr=Putative reverse transcriptase; Petunia hybrida (Petunia).	-	-	34%
Blast2go	gag-pol polyprotein	-	-	55%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA metabolic process	GO:0006259	Biological Process	0.0	55%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	0.0	55%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Transposase, MuDR, plant	IPR004332	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-
Sma3	MULE transposase domain	IPR018289	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q6VPE7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 45 aas, your sequence is shorter than subject: 148 - 435

Fln protein: QPLQFIQTQGTLQNDRHQKWSTYLQQFHLNIKYKKGNTNNVEYSLS*PLIMALTTMLNSCGHETFDWPLLYKINPEFGDRY*TLLEGQHVQYFHLQDALLCHLGHLCVPSSECVKMIWETHYIRAVGHFGVEKTMAVLQKYFYWSHL*

Protein Length: 149

Fln nts: ACCAACCCCTACAATTCATACAGACACAAGGGACGTTGCAGAATGATCGCCATCAGAAGTGGTCCACATACCTGCAACAGTTCCATTTGAATATCAAGTATAAGAAGGGCAACACCAATAATGTTGAATATTCCCTCAGTTGACCATTGATCATGGCGTTAACCACCATGCTCAACTCTTGTGGGCACGAGACTTTTGATTGGCCACTTCTCTATAAAATAAACCCAGAATTCGGTGACAGATACTAGACACTCTTGGAGGGTCAGCATGTTCAATATTTTCACCTCCAGGATGCCCTATTATGCCACCTAGGTCACCTTTGTGTTCCTTCAAGCGAGTGTGTCAAGATGATTTGGGAAACACACTACATTCGGGCTGTTGGACATTTCGGGGTCGAGAAAACAATGGCAGTACTACAAAAGTATTTCTATTGGTCGCATCTTTGACAG

Fln Alignment:

uagpf_mira_c20549___NDRHQKWSTYLQQFHLNIKYKKGNTNNVEYSLS*PLIMALTTMLNSCGHETFDWPLLYKINPEFGDRY*TLLEGQHVQYFHLQDALLCHLGHLCVPSSECVKM-IWETHYIRAVGHFGVEKTMAVLQKYFYW
Q6VPE7________________NKRHAKWVEFIESFPYVIQYKKGKDNVVADALSRKFALATTLTSKLMGFESIK--LMYAHDPMLKTVHDALEKGERVEKYQWSNGFIFKNGRVCIPESSWRELLVQEAHCGGLMGHFGVRKTLAVLQEQFYW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain