SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene33374

Length: 195 nt

UniGene Fasta

>uagpf_v2_unigene33374
CGTCGTGACCTTGGCTGTCACTCAAAGTTTTACCAACATTTCATTGGGATCCCTGATGCAGATGTAATAGTATTTTTGAAAAAGCTTACTTTCTTGAGCCTGGAAGAAATATCTGAGCTTGAAGAAGGCATGAGAAAGCCTGGATATGTCCCCAATTCTGTTCAGAGGAAGCTTGCTGAAGAAGTGACTTGTTTC

Ace file of the UniGene uagpf_v2_unigene33374

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene12479	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Tyrosyl-tRNA synthetase, putative n=1 Tax=Ricinus communis RepID=B9RGT2_RICCO	-	-	61%
FL-Next	tr=Os01g0500900 protein; Oryza sativa subsp. japonica (Rice).	-	-	70%
Blast2go	tyrosyl-trna synthetase-like	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	RNA-directed DNA polymerase.	EC:2.7.7.49	-	0.0	79%
Blast2go	Tyrosine--tRNA ligase.	EC:6.1.1.1	-	0.0	79%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Aminoacyl-tRNA biosynthesis	00970		0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	RNA-dependent DNA replication	GO:0006278	Biological Process	79%
Blast2go	tyrosyl-tRNA aminoacylation	GO:0006437	Biological Process	79%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	79%
Blast2go	RNA binding	GO:0003723	Molecular Function	79%
Blast2go	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	79%
Blast2go	ATP binding	GO:0005524	Molecular Function	79%
Blast2go	tyrosine-tRNA ligase activity	GO:0004831	Molecular Function	79%
Blast2go	mitochondrion	GO:0005739	Cellular Component	79%
Blast2go	chloroplast	GO:0009507	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Hydroxymethylglutaryl-CoA reductase, class I/II	IPR002202	-	-
Sma3	Aminoacyl-tRNA synthetase, class Ic	IPR002305	-	-
Sma3	Tyrosyl-tRNA synthetase	IPR002307	-	-
Sma3	RNA-binding S4 domain	IPR002942	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q943W5

Fln msg: Distance to subject end: 117 aas, your sequence is shorter than subject: 65 - 497

Fln protein: RRDLGCHSKFYQHFIGIPDADVIVFLKKLTFLSLEEISELEEGMRKPGYVPNSVQRKLAEEVTCF

Protein Length: 66

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGTTTTACCAACATTTCATTGGGATCCCTGATGCAGATGTAATAGTATTTTTGAAAAAGCTTACTTTCTTGAGCCTGGAAGAAATATCTGAGCTTGAAGAAGGCATGAGAAAGCCTGGATATGTCCCCAATTCTGTTCAGAGGAAGCTTGCTGAAGAAGTGACTTGTTTC

Fln Alignment:

uagpf_mira_c20537___KFYQHFIGIPDADVIVFLKKLTFXXXXXXXXXXXGMRKPGYVPNSVQRKLAEEVTCF
Q943W5________________KFYQYFFSVPDIDVIRFMKILTFMSLDEIQELEESMKKPGYVPNTIQRRLAEEVTRF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain