SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene33300

Length: 276 nt

UniGene Fasta

>uagpf_v2_unigene33300
CGTCGTGACCTTGGCTGTCACTCAAGATTTACTGAAAAATGAGTTTGGTCGAGAAATAGATGACCATGATGCAGTTATTCGAGACAATGAAGCTCCAGTGAACGAGAAATATGCCAAGTACGTAGGCATGAAGAGAAACTTTCGTCTTCTGGTAAGGGGAGTAGCAAGAAACATGATCACAGTTGCCAATGGATCTGCGGATGAGGTGCTGATTATTAAGAGTGTGATCCATAGAGACTTCAATGCTATGATCAAGGAGCTTCCTAATCCGGTTTA

Ace file of the UniGene uagpf_v2_unigene33300

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13656	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Alpha-2,8-sialyltransferase 8b, putative n=1 Tax=Ricinus communis RepID=B9RGY5_RICCO	-	-	77%
FL-Next	tr=Sialyltransferase like protein; Aquilegia formosa x Aquilegia pubescens.	-	-	79%
Blast2go	sialyltransferase-like protein	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	protein glycosylation	GO:0006486	Biological Process	86%
Blast2go	sialyltransferase activity	GO:0008373	Molecular Function	86%
Blast2go	integral to Golgi membrane	GO:0030173	Cellular Component	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 29	IPR001675	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q2WBH5

Fln msg: Distance to subject end: 199 aas, your sequence is shorter than subject: 91 - 476

Fln protein: VVTLAVTQDLLKNEFGREIDDHDAVIRDNEAPVNEKYAKYVGMKRNFRLLVRGVARNMITVANGSADEVLIIKSVIHRDFNAMIKELPNPV

Protein Length: 92

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGATTTACTGAAAAATGAGTTTGGTCGAGAAATAGATGACCATGATGCAGTTATTCGAGACAATGAAGCTCCAGTGAACGAGAAATATGCCAAGTACGTAGGCATGAAGAGAAACTTTCGTCTTCTGGTAAGGGGAGTAGCAAGAAACATGATCACAGTTGCCAATGGATCTGCGGATGAGGTGCTGATTATTAAGAGTGTGATCCATAGAGACTTCAATGCTATGATCAAGGAGCTTCCTAATCCGGTTTA

Fln Alignment:

uagpf_mira_c20452___DLLKNEFGREIDDHDAVIRDNEAPVNEKYAKYVGMKRNFRLLVRGVARNMITVANGSADEVLIIKSVIHRDFNAMIKELPNPV
Q2WBH5________________DLLKTEFGEEIDRHDVVIRDNEAPVNEKYAKYVGLKRDFRLIVRGAARNMVSILNGSDDEVLIIKSVTHRDFNTMIKSVPNPV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain