SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene33272

Length: 463 nt

UniGene Fasta

>uagpf_v2_unigene33272
CGTCGTGACCTTGGCTGTCACTCAAATGGATCCTGCGACGTCTGTTGTGGACGAGAATGGAGAAAGTTGGGAAGTTGAGGGTTTATTTGTGAGCGATGCCAGTGTTCTGCCCACCGCGTTGGGAGTCAATCCGATGATAACAGTTCAGTCGGTATCCTTGTGCATTTCTCGCAGAGTAGCCCGATTCCTGCAGCGAACATCCCCATGAGAATCTCTATAATTCTTCTTTACTCCAAGTATTTGCTTAAATTAAATCTTTGTTAAACTCGACTGCCATGAGAATACGACACCACTCTAGATAATTTTCTCCGTTCCTTTATGTGGTTATTTATTTCGCAGGCTGTTTCACTTTTTATGTTTTGATTTTTTTTAATGATAAAATTGGTCATAATCTAATCTAAATGTATATATAGTTTTATCTCCGTTTAATCTAAGTGTATATATAGTTTTATCTCCGTTTAAA

Ace file of the UniGene uagpf_v2_unigene33272

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27623	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GMC_oxred_C domain containing protein	-	-	5.0e-20	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Blast2go	long-chain-alcohol oxidase fao4a-like	-	-	0.0	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	0.0	69%

Source	InterPros	Term	Type	Identity
Sma3	Glucose-methanol-choline oxidoreductase, N-terminal	IPR000172	-	-
Sma3	Thiamine biosynthesis Thi4 protein	IPR002922	-	-
Sma3	Monooxygenase, FAD-binding	IPR002938	-	-
Sma3	Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal	IPR003953	-	-
Sma3	Glucose-methanol-choline oxidoreductase, C-terminal	IPR007867	-	-
Sma3	Alcohol dehydrogenase, long-chain fatty	IPR012400	-	-
Sma3	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	IPR013027	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ84

Fln msg: your sequence is shorter than subject: 69 - 743

Fln protein: VVTLAVTQMDPATSVVDENGESWEVEGLFVSDASVLPTALGVNPMITVQSVSLCISRRVARFLQRTSP*

Protein Length: 70

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATGGATCCTGCGACGTCTGTTGTGGACGAGAATGGAGAAAGTTGGGAAGTTGAGGGTTTATTTGTGAGCGATGCCAGTGTTCTGCCCACCGCGTTGGGAGTCAATCCGATGATAACAGTTCAGTCGGTATCCTTGTGCATTTCTCGCAGAGTAGCCCGATTCCTGCAGCGAACATCCCCATGA___GAATCTCTATAATTCTTCTTTACTCCAAGTATTTGCTTAAATTAAATCTTTGTTAAACTCGACTGCCATGAGAATACGACACCACTCTAGATAATTTTCTCCGTTCCTTTATGTGGTTATTTATTTCGCAGGCTGTTTCACTTTTTATGTTTTGATTTTTTTTAATGATAAAATTGGTCATAATCTAATCTAAATGTATATATAGTTTTATCTCCGTTTAATCTAAGTGTATATATAGTTTTATCTCCGTTTAAA

Fln Alignment:

uagpf_mira_c20417___DPATSVVDENGESWEVEGLFVSDASVLPTALGVNPMITVQSVSLCISRRVARFLQRTS
B8LQ84________________DEESGGVDWKGESWEVEGLFVCDGSLLPTSVGVNPMITIQSLAFCVANYILQFLRTNS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain