SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene33224

Length: 417 nt

UniGene Fasta

>uagpf_v2_unigene33224
CGTCGTGACCTTGGCTGTCACTCATTTCTGTAGCACTTCCAATTTGGATAAACAATGGATATCGTTTTTGCATGCCTCCTGCAGATCAAACAAGCAATATGCACGGATGCTGTCATAGGTTGAAAGAGGGCCTTGCCATGGGGATATCCGTAACCATATTCATCTTTTCTGTTATAGCATTGGGTACTATAATATCTGTTAAACCTTTAGATGATCTGGGCTACCATGGTTGGAATGGTGACCAAGAGAGTTTCACTTCCCCATATACATCATCTTTTTACTTGGGTTGGCTATTGCATCCGCTTTTGCTCTAACTATCACTGGCATTCTCCCTGTTGTTTCTTGGTTTGCAACTTACCGATTTTTCCTTTCATCGGCTATTTGTGTGGGCATTTTCATAATTGTTCTAGTGACCTT

Ace file of the UniGene uagpf_v2_unigene33224

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene38477	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	calpain, putative (EC:3.4.22.52)	-	-	62%
FL-Next	tr=Phytocalpain; Nicotiana benthamiana.	-	-	45%
Blast2go	calpain-type cysteine protease	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	cell fate specification	GO:0001708	Biological Process	74%
Blast2go	endosperm development	GO:0009960	Biological Process	74%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	74%
Blast2go	plasma membrane	GO:0005886	Cellular Component	74%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase C2, calpain, catalytic domain	IPR001300	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q6SSJ2

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 281 and 281, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 1294 aas, your sequence is shorter than subject: 138 - 2142

Fln protein: S*PWLSLISVALPIWINNGYRFCMPPADQTSNMHGCCHRLKEGLAMGISVTIFIFSVIALGTIISVKPLDDLGYHGWNGDQESFTSPYTSSFxxGLAIASAFALTITGILPVVSWFATYRFFLSSAICVGIFIIVLVT

Protein Length: 139

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTCTGTAGCACTTCCAATTTGGATAAACAATGGATATCGTTTTTGCATGCCTCCTGCAGATCAAACAAGCAATATGCACGGATGCTGTCATAGGTTGAAAGAGGGCCTTGCCATGGGGATATCCGTAACCATATTCATCTTTTCTGTTATAGCATTGGGTACTATAATATCTGTTAAACCTTTAGATGATCTGGGCTACCATGGTTGGAATGGTGACCAAGAGAGTTTCACTTCCCCATATACATCATCTTTTxxxxxxGGGTTGGCTATTGCATCCGCTTTTGCTCTAACTATCACTGGCATTCTCCCTGTTGTTTCTTGGTTTGCAACTTACCGATTTTTCCTTTCATCGGCTATTTGTGTGGGCATTTTCATAATTGTTCTAGTGACCTT

Fln Alignment:

uagpf_mira_c20359___LSLISVALPIWINNGYRFCMPPADQTSNMHG-CCHRLKEGLAMGISVTIFIFSVIALGTIISVKPLDDLGYHGWNGDQESFTSPYTSSFYLGLAIASAFALTITGILPVVSWFATYRFFLSSAICVGIFIIVLVT
Q6SSJ2________________VACLSIAIPIWIRNGYQFWSSRAEDTGRAGSHLTLGMKEGAVLCISISLFAGSVLVLGAIVSAKPLDDLDYKGWTGSRNGVTSPYASSVYLGWAMASGIALVVTGMLPIISWFATYRFSLSSAICIGIFAAVIVT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain