SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene33105

Length: 303 nt

UniGene Fasta

>uagpf_v2_unigene33105
TGGAGAAGCGAACATGGCCATACGGATCAGACGGTCGGCAGGTGCCCCGCGCCTTCTCATCGGCTTTGATTGCAGGTGGCAATGGCAGAAAGTGTAAACGGAGTGAGAAGGAGATGATCGACGTGAAATGGAGCAACAGGCTTGGGGATGGTAGGGGGGACTTGTTTAGCTCAATTCCGACGGACTTGCTGAGGAGAATTGCAGGGTCGTTCAACGTGCCGACTTTGTGGGCCACGAGTGGCGTTTGCAGAGCGTGGAAGGAAGGGCTGAGTTCGCTGAGGGAGGCGATGGTCTTTGTACAGT

Ace file of the UniGene uagpf_v2_unigene33105

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3884	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	F-box protein [Arabidopsis thaliana] sp\|Q94C27.1\|FB84_ARATH RecName: Full=F-box protein At1g70590 gb\|AAK59789.1\| At1g70590/F5A18_23 [Arabidopsis thaliana] gb\|AAO11593.1\| At1g70590/F5A18_23 [Arabidopsis thaliana] gb\|AEE35086.1\| F-box protein [Arabidopsis t	-	-	50%
FL-Next	sp=F-box protein At1g70590; Arabidopsis thaliana (Mouse-ear cress).	-	-	42%
Blast2go	f-box protein	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	binding	GO:0005488	Molecular Function	70%
Blast2go	mitochondrion	GO:0005739	Cellular Component	70%
Blast2go	plastid	GO:0009536	Cellular Component	70%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Sel1-like	IPR006597	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q94C27

Fln msg: Distance to subject end: 241 aas, atg_distance in limit (1-15): atg_distance = 16, No stop codon before M and M found is too far from subject M, your sequence is shorter than subject: 63 - 351

Fln protein: MIDVKWSNRLGDGRGDLFSSIPTDLLRRIAGSFNVPTLWATSGVCRAWKEGLSSLREAMVFVQ

Protein Length: 64

Fln nts: TGGAGAAGCGAACATGGCCATACGGATCAGACGGTCGGCAGGTGCCCCGCGCCTTCTCATCGGCTTTGATTGCAGGTGGCAATGGCAGAAAGTGTAAACGGAGTGAGAAGGAGATGATCGACGTGAAATGGAGCAACAGGCTTGGGGATGGTAGGGGGGACTTGTTTAGCTCAATTCCGACGGACTTGCTGAGGAGAATTGCAGGGTCGTTCAACGTGCCGACTTTGTGGGCCACGAGTGGCGTTTGCAGAGCGTGGAAGGAAGGGCTGAGTTCGCTGAGGGAGGCGATGGTCTTTGTACAGT

Fln Alignment:

uagpf_mira_c20216___SNRLGDGRGDLFSSIPTDLLRRIAGSFNVPTLWATSGVCRAWKEGLSSLREAMVFVQ
Q94C27________________SNEFGD-----FSMLPYDILMKIAAPFSHPNLQAASLVCKSWRDALKPLRESMLLIR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain