SustainPineDB

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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene33104

Length: 365 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene33104
CAATGATACAACACAGGAGGAACAATAGAATTCTGGCTCTGAAGAATCAAGAGGGTCATTTCATTCACTCTCATGAGGAGTTGGAAACAGAACTCAATCACTATTTCAACTCTCTTCTCAAAGTGCCAAGGAATGACCAGGAGAAGAACATCAAAAAGATCAACAATAATATCCCCAAAATACTCATGGAGGACCATAACAAAATGCTCCTAAGGAAAGTCTCCCTCCAGGAAGTGGAAGATGTCGTCATGGGAATGCCCAATGGAAAATTTCCAGGTCCGGATGGATTCACCATTGATTTCTACAAAGCTTGTTGGCCTATCATAAAATTGGAAGTTCATTGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene33104 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene53786	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	F21E10.5 protein n=1 Tax=Arabidopsis thaliana RepID=O65244_ARATH	-	-	4.0e-10	33%
FL-Next	tr=F21E10.5 protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	33%
Blast2go	non-ltr retroelement reverse transcriptase	-	-	9.81262e-12	50%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: O65244

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 539 aas, your sequence is shorter than subject: 114 - 928

Fln protein: MIQHRRNNRILALKNQEGHFIHSHEELETELNHYFNSLLKVPRNDQEKNIKKINNNIPKILMEDHNKMLLRKVSLQEVEDVVMGMPNGKFPGPDGFTIDFYKACWPIIKLEVH*

Protein Length: 115

Fln nts: CAATGATACAACACAGGAGGAACAATAGAATTCTGGCTCTGAAGAATCAAGAGGGTCATTTCATTCACTCTCATGAGGAGTTGGAAACAGAACTCAATCACTATTTCAACTCTCTTCTCAAAGTGCCAAGGAATGACCAGGAGAAGAACATCAAAAAGATCAACAATAATATCCCCAAAATACTCATGGAGGACCATAACAAAATGCTCCTAAGGAAAGTCTCCCTCCAGGAAGTGGAAGATGTCGTCATGGGAATGCCCAATGGAAAATTTCCAGGTCCGGATGGATTCACCATTGATTTCTACAAAGCTTGTTGGCCTATCATAAAATTGGAAGTTCATTGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

uagpf_mira_c20215___MIQHRRNNRILALKNQEGHFIHSHEELETELNHYFNSLLKVPRNDQEXXXXXXXXXXXXILMEDHNK-MLLRKVSLQEVEDVVMGMPNGKFPGPDGFTIDFYKACWPIIKLE
O65244________________VVAREAQNSIREIICHDGSVASQEEKIKTEAEHHFREFLQLIPNDFEGIAVEELQDLLPYRCSDSDKEMLTNHVSAEEIHKVVFSMPNDKSPGPDGYTAEFYKGAWNIIGAE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain