SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene33080

Length: 227 nt

UniGene Fasta

>uagpf_v2_unigene33080
CTTATAGGACATCGTGACCATTCGGGCAGAGGTTTGCAGGGTTTCAGGACACATGGCAAGCTGGAGAGCCCCCTTGAGCTTTTTAGAAAGGTTCCCGGAAATAATGTTTGTGCAGATTGTGGTTCACCTGAACCAGACTGGGCCTCACTGAACCTTGGTGTGTTACTTTGCATCGAATGTTCAGGGGTTCACCGCAACCTTGGTGTACATATATCAAAGGTCAGGTC

Ace file of the UniGene uagpf_v2_unigene33080

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene432	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	ADP-ribosylation factor GTPase-activating protein AGD3 [Arabidopsis thaliana] sp\|Q5W7F2.1\|AGD3_ARATH RecName: Full=ADP-ribosylation factor GTPase-activating protein AGD3; Short=ARF GAP AGD3; AltName: Full=Protein ARF-GAP DOMAIN 3; Short=AtAGD3; AltName: F	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Blast2go	adp-ribosylation factor gtpase-activating protein agd3	-	-	66%

Source	GOs	Term	Type	Identity
Blast2go	xylem and phloem pattern formation	GO:0010051	Biological Process	66%
Blast2go	leaf morphogenesis	GO:0009965	Biological Process	66%
Blast2go	phloem or xylem histogenesis	GO:0010087	Biological Process	66%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	66%
Blast2go	protein binding	GO:0005515	Molecular Function	66%
Blast2go	phosphatidylinositol binding	GO:0035091	Molecular Function	66%
Blast2go	ARF GTPase activator activity	GO:0008060	Molecular Function	66%
Blast2go	trans-Golgi network transport vesicle	GO:0030140	Cellular Component	66%
Blast2go	cytosol	GO:0005829	Cellular Component	66%
Blast2go	plasma membrane	GO:0005886	Cellular Component	66%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Arf GTPase activating protein	IPR001164	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	BAR domain	IPR004148	-	-
Sma3	Pleckstrin homology-like domain	IPR011993	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLJ7

Fln msg: Distance to subject end: 296 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 75 - 370

Fln protein: LIGHRDHSGRGLQGFRTHGKLESPLELFRKVPGNNVCADCGSPEPDWASLNLGVLLCIECSGVHRNLGVHISKVR

Protein Length: 76

Fln nts: CTTATAGGACATCGTGACCATTCGGGCAGAGGTTTGCAGGGTTTCAGGACACATGGCAAGCTGGAGAGCCCCCTTGAGCTTTTTAGAAAGGTTCCCGGAAATAATGTTTGTGCAGATTGTGGTTCACCTGAACCAGACTGGGCCTCACTGAACCTTGGTGTGTTACTTTGCATCGAATGTTCAGGGGTTCACCGCAACCTTGGTGTACATATATCAAAGGTCAGGTC

Fln Alignment:

uagpf_mira_c20185___GFRTHGKLESPLELFRKVPGNNVCADCGSPEPDWASLNLGVLLCIECSGVHRNLGVHISKV
B8LLJ7________________GYKSSGSMRRLKDLLAQ-PDNQVCADCCSPDPRWASTSIGVFICIKCSGVHRSLGVHISKV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain