SustainPineDB

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Assembly info
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SNPs
SSRs
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ECs
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miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene32981

Length: 117 nt

UniGene Fasta

>uagpf_v2_unigene32981
TATCATGCGGTGCTCTGTTCTTTGTATCTGTGTAACGCTGTGCAGCCTGCTAGCGGGCTCTCAATGTGCGTCCTTCGACGATTTCTTCTACCCCAGTTGGGCTGTTGATCATGTCAT

Ace file of the UniGene uagpf_v2_unigene32981

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene30742	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Xyloglucan endotransglucosylase/hydrolase protein 9, putative n=1 Tax=Ricinus communis RepID=B9S9N2_RICCO	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	72%
Blast2go	xyloglucan endotransglucosylase hydrolase protein 9	-	-	79%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Beta-glucanase	IPR008264	-	-
Sma3	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9T0

Fln msg: Distance to subject end: 235 aas, atg_distance in limit (1-15): atg_distance = 13, your sequence is shorter than subject: 37 - 286

Fln protein: MRCSVLCICVTLCSLLAGSQCASFDDFFYPSWAVDHV

Protein Length: 38

Fln nts: TATC_-_ATGCGGTGCTCTGTTCTTTGTATCTGTGTAACGCTGTGCAGCCTGCTAGCGGGCTCTCAATGTGCGTCCTTCGACGATTTCTTCTACCCCAGTTGGGCTGTTGATCATGTCAT

Fln Alignment:

uagpf_mira_c20067___VLCICVTLCSLLAGSQCASFDDFFYPSWAVDHV
D5A9T0________________VLSSIVMLCSLVVGSQCAAFNDFFYPSWALDHV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain