SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene32920

Length: 184 nt

UniGene Fasta

>uagpf_v2_unigene32920
CGTCGTGACCTTGGCTGTCACTCAATTTTGTAAGTGCATGCACACGAATTCTTGGACTGGAGGGGACTCTAGAAGGTGTGGAGTACCAGGGAAAGTTGATTCGAGTTGCAGCGTTCCCCATAGGCATTGACTCGGAGAGGTTTACAAAAGCACTTGAATTGCCTGAAGTCAAGGAGCACATCAG

Ace file of the UniGene uagpf_v2_unigene32920

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5963	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Trehalose-6-phosphate synthase, putative n=1 Tax=Ricinus communis RepID=B9SZ18_RICCO	-	-	76%
FL-Next	sp=Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	77%
Blast2go	trehalose-6-phosphate synthase	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Alpha,alpha-trehalose-phosphate synthase (UDP-forming).	EC:2.4.1.15	-	0.0	86%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	86%
Blast2go	Trehalose-phosphatase.	EC:3.1.3.12	-	0.0	86%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	86%

Source	GOs	Term	Type	Identity
Blast2go	cell division	GO:0051301	Biological Process	86%
Blast2go	trehalose biosynthetic process	GO:0005992	Biological Process	86%
Blast2go	plant-type cell wall biogenesis	GO:0009832	Biological Process	86%
Blast2go	sugar mediated signaling pathway	GO:0010182	Biological Process	86%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	86%
Blast2go	alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	GO:0003825	Molecular Function	86%
Blast2go	trehalose-phosphatase activity	GO:0004805	Molecular Function	86%
Blast2go	cytoplasm	GO:0005737	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Sma3	Sucrose synthase	IPR000368	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Glycosyl transferase, family 20	IPR001830	-	-
Sma3	Trehalose-phosphatase	IPR003337	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Alpha,alpha-trehalose-phosphate synthase	IPR012766	-	-
Sma3		IPR015706	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SYM4

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 590 aas, your sequence is shorter than subject: 60 - 942

Fln protein: S*PWLSLNFVSACTRILGLEGTLEGVEYQGKLIRVAAFPIGIDSERFTKALELPEVKEHI

Protein Length: 61

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTGTAAGTGCATGCACACGAATTCTTGGACTGGAGGGGACTCTAGAAGGTGTGGAGTACCAGGGAAAGTTGATTCGAGTTGCAGCGTTCCCCATAGGCATTGACTCGGAGAGGTTTACAAAAGCACTTGAATTGCCTGAAGTCAAGGAGCACATCAG

Fln Alignment:

uagpf_mira_c19999___NFVSACTRILGLEGTLEGVEYQGKLIRVAAFPIGIDSERFTKALELPEVKEHI
Q9SYM4________________HFVSACTRILGLEGTPEGVEDQGRLTRVAAFPIGIDSDRFIRALEVPEVIQHM

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain