SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene32881

Length: 130 nt

UniGene Fasta

>uagpf_v2_unigene32881
CGTCGTGACCTTGGCTGTCACTCATTTTGCAGCCTCATCATTTATTAGATGGACTAACAGAGGTACTGGGAGAGAATGATGAACTTCAAAAGCTCAAAGATGGGCTATTTGGAGATGTGTTAAGGTCCAC

Ace file of the UniGene uagpf_v2_unigene32881

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18315	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Sucrose synthase n=1 Tax=Pinus taeda RepID=A6N837_PINTA	-	-	82%
FL-Next	tr=Sucrose synthase; Pinus taeda (Loblolly pine).	-	-	71%
Blast2go	sucrose synthase	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Sucrose synthase.	EC:2.4.1.13	-	0.0	83%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	83%
Blast2go	Metabolic pathways	01100		0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	suspensor development	GO:0010098	Biological Process	83%
Blast2go	sucrose metabolic process	GO:0005985	Biological Process	83%
Blast2go	seed maturation	GO:0010431	Biological Process	83%
Blast2go	starch metabolic process	GO:0005982	Biological Process	83%
Blast2go	sucrose synthase activity	GO:0016157	Molecular Function	83%

Source	InterPros	Term	Type	Identity
Sma3	Sucrose synthase	IPR000368	-	-
Sma3	Glycosyl transferase, family 1	IPR001296	-	-
Sma3	Glycosyl transferase, family 20	IPR001830	-	-
Sma3	Trehalose-phosphatase	IPR003337	-	-
Sma3	Sucrose synthase, plant/cyanobacteria	IPR012820	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A6N837

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 757 aas, your sequence is shorter than subject: 42 - 833

Fln protein: S*PWLSLILQPHHLLDGLTEVLGENDELQKLKDGLFGDVLRS

Protein Length: 43

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTGCAGCCTCATCATTTATTAGATGGACTAACAGAGGTACTGGGAGAGAATGATGAACTTCAAAAGCTCAAAGATGGGCTATTTGGAGATGTGTTAAGGTCCAC

Fln Alignment:

uagpf_mira_c19953___ILQPHHLLDGLTEVLGENDELQKLKDGLFGDVLRS
A6N837________________ILQPHQLLDGLEEVIGKNVELESLRHGLFGEVLRS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain